Methods and compositions for targeted nucleic acid sequencing
First Claim
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1. A method for preparing a substrate-bound anchor probe comprising a sequence of a target nucleic acid comprising:
- (a) providing a nucleic acid library comprising a plurality of different nucleic acids, wherein the nucleic acid library comprises a double-stranded target nucleic acid;
(b) hybridizing a first adapter probe with the target nucleic acid in the presence of a recombinase,wherein the first adapter probe comprises a first portion complementary to a substrate probe and a second portion complementary to at least a portion of the double-stranded target nucleic acid, andwherein the recombinase promotes hybridizing the second portion with the double-stranded target nucleic acid;
(c) extending the hybridized first adapter probe;
(d) hybridizing the extended adapter probe with the substrate probe, wherein the substrate probe is immobilized on a first substrate; and
(e) extending the hybridized substrate probe to form a substrate-bound anchor probe comprising the sequence of the target nucleic acid.
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Abstract
Embodiments provided herein relate to methods and compositions for obtaining nucleic acid sequence information. Some embodiments provided herein include methods and compositions for preparing nucleic acid libraries. In some embodiments, such nucleic acid libraries are useful for targeted nucleic acid sequencing.
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Citations
23 Claims
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1. A method for preparing a substrate-bound anchor probe comprising a sequence of a target nucleic acid comprising:
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(a) providing a nucleic acid library comprising a plurality of different nucleic acids, wherein the nucleic acid library comprises a double-stranded target nucleic acid; (b) hybridizing a first adapter probe with the target nucleic acid in the presence of a recombinase, wherein the first adapter probe comprises a first portion complementary to a substrate probe and a second portion complementary to at least a portion of the double-stranded target nucleic acid, and wherein the recombinase promotes hybridizing the second portion with the double-stranded target nucleic acid; (c) extending the hybridized first adapter probe; (d) hybridizing the extended adapter probe with the substrate probe, wherein the substrate probe is immobilized on a first substrate; and (e) extending the hybridized substrate probe to form a substrate-bound anchor probe comprising the sequence of the target nucleic acid. - View Dependent Claims (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17)
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18. A method of preparing a nucleic acid library comprising:
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(a) providing a plurality of anchor probes, wherein the anchor probes are each immobilized on a substrate; (b) hybridizing a plurality of double-stranded target nucleic acids with the plurality of anchor probes in the presence of a recombinase under conditions wherein the recombinase promotes the hybridizing with the target nucleic acids; (c) hybridizing the plurality of double-stranded target nucleic acids with a plurality of ligation probes in the presence of a recombinase under conditions wherein the recombinase promotes the hybridizing with the target nucleic acids; (d) extending the anchor probes or the ligation probes; and (e) ligating the anchor probes to the ligation probes to form a plurality of different extended ligated probes, wherein the extended ligated probes are immobilized to the substrate, thereby preparing the library of nucleic acids. - View Dependent Claims (20, 21, 22)
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19. A method of detecting a nucleic acid comprising:
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(a) providing an anchor probe, wherein the anchor probe is immobilized on a substrate; (b) hybridizing a double-stranded target nucleic acid with the anchor probe in the presence of a recombinase under conditions wherein the recombinase promotes the hybridizing with the target nucleic acid; (c) hybridizing the double-stranded target nucleic acid with a ligation probe in the presence of a recombinase under conditions wherein the recombinase promotes the hybridizing with the target nucleic acid; (d) extending the anchor probe or the ligation probe; (e) ligating the anchor probe to the ligation probe to form an extended ligated probe, wherein the extended ligation probe is immobilized to the substrate; and (f) detecting the extended ligated probe, thereby detecting the nucleic acid. - View Dependent Claims (23)
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Specification