Devices and methods for molecular diagnostic testing

• US 10,112,197 B2
• Filed: 12/29/2017
• Issued: 10/30/2018
• Est. Priority Date: 12/31/2014
• Status: Active Grant

• Current Assignee: Visby Medical, Inc.
• Original Assignee: Click Diagnostics, Inc.
• Inventors: Andreyev, Boris, Moravick, Keith E., Ciopyk, Brian, Briones, Victor, Loney, Gregory, De La Zerda, Adam, Ching, Jesus, Chu, Steven, Swenson, David, Huang, Helen
• Primary Examiner(s): Hurst, Jonathan M
• Application Number:
  US15/858,452
• Publication Number:
  US 20180117590A1
• Time in Patent Office: 305 Days
• CPC Class Codes: B01L 2200/025 Align devices or objects to ensure defined positions relative to each other
• CPC Class Codes: B01L 2200/028 Modular arrangements
• CPC Class Codes: B01L 2200/0647 Handling flowable solids, e.g. microscopic beads, cells, particles
• CPC Class Codes: B01L 2200/0684 Venting, avoiding backpressure, avoid gas bubbles
• CPC Class Codes: B01L 2200/0689 Sealing
• CPC Class Codes: B01L 2200/10 Integrating sample preparation and analysis in single entity, e.g. lab-on-a-chip concept
• CPC Class Codes: B01L 2300/0627 Sensor or part of a sensor is integrated
• CPC Class Codes: B01L 2300/0654 Lenses; Optical fibres
• CPC Class Codes: B01L 2300/0672 Integrated piercing tool
• CPC Class Codes: B01L 2300/0681 Filter
• CPC Class Codes: B01L 2300/0867 Multiple inlets and one sample wells, e.g. mixing, dilution
• CPC Class Codes: B01L 2300/0883 Serpentine channels
• CPC Class Codes: B01L 2300/18 Means for temperature control
• CPC Class Codes: B01L 2300/1822 using Peltier elements
• CPC Class Codes: B01L 2300/1844 using fans
• CPC Class Codes: B01L 2400/0457 passive flow or gravitation
• CPC Class Codes: B01L 2400/0478 pistons
• CPC Class Codes: B01L 2400/0487 fluid pressure, pneumatics
• CPC Class Codes: B01L 2400/0605 check valves
• CPC Class Codes: B01L 2400/0611 duck bill valves
• CPC Class Codes: B01L 2400/0644 : rotary valves
• CPC Class Codes: B01L 3/5027 : by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip B01L3/5023 takes precedence; micromixers B01F33/30; microreactors for synthesis B01J19/0093; microcapillary devices in general B81B1/00
• CPC Class Codes: B01L 3/502715 : characterised by interfacing components, e.g. fluidic, electrical, optical or mechanical interfaces
• CPC Class Codes: B01L 3/5029 : using swabs
• CPC Class Codes: B01L 3/527 : for a plurality of reagents
• CPC Class Codes: B01L 7/52 : with provision for submitting samples to a predetermined sequence of different temperatures, e.g. for treating nucleic acid samples amplification or hybridisation processes per se C12Q1/68; controlling sequential reactions for synthesis B01J19/0046
• CPC Class Codes: B01L 7/525 : with physical movement of samples between temperature zones

Abstract

A hand-held molecular diagnostic test device includes a housing, an amplification (or PCR) module, and a detection module. The amplification module is configured to receive an input sample, and defines a reaction volume. The amplification module includes a heater such that the amplification module can perform a polymerase chain reaction (PCR) on the input sample. The detection module is configured to receive an output from the amplification module and a reagent formulated to produce a signal that indicates a presence of a target amplicon within the input sample. The amplification module and the detection module are integrated within the housing.

Claims

1. A method of detecting a target nucleic acid using a stand-alone molecular diagnostic test device without any external instrument, the stand-alone molecular diagnostic test device including an amplification module, a detection module, and a control module, each of the amplification module, the detection module, and the control module integrated within a housing, the method comprising:

heating a first heating portion of a heater of the amplification module to produce a first temperature zone within a first portion of a reaction volume of the amplification module and a second heating portion of the heater to produce a second temperature zone within a second portion of the reaction volume;

producing a flow of an input sample within the reaction volume such that the input sample is thermally cycled through at least 30 thermal cycles to amplify the target nucleic acid within the input sample to produce an output solution containing a target amplicon;

controlling, via the control module, the flow of the input sample through the reaction volume to produce a flow rate of the input sample of at least 0.2 μ

l/sec;

conveying to the detection module the output solution, the detection module containing a reagent formulated to produce a signal that indicates a presence of the target amplicon within the output solution, the detection module including a detection surface capturing the target amplicon to produce the signal; and

discarding the stand-alone molecular test device after the signal is read.

2. The method of claim 1, wherein the signal is a visible signal characterized by a color that indicates the presence of the target amplicon within the output solution.

3. The method of claim 1, wherein a volume of the output solution conveyed to the detection module is at least about 75 μ

l.

4. The method of claim 3, wherein the producing the flow of the input sample within the reaction volume is performed in a manner to thermally cycle the input sample in less than 10 minutes.

5. The method of claim 1, wherein the producing the flow includes actuating a fluid pump to generate within the housing a force to produce the flow of the input sample.

6. The method of claim 5, wherein the fluid pump includes a barrel and a plunger having a portion movably disposed within the barrel, the barrel in fluid communication with the reaction volume such that a movement of the portion of the plunger within the barrel produces the flow of the input sample within the reaction volume.

7. The method of claim 1, further comprising:

receiving power from a power source outside of the housing to perform any of the heating, the producing the flow of the input sample, the controlling, or the conveying the output solution.

8. The method of claim 1, wherein the heating, the producing the flow of the input sample, the controlling, and the conveying the output solution are caused by manipulating an actuator coupled to the housing.

13. The method of claim 5, wherein the controlling includes regulating, via the control module, a power input to the fluid pump to control the flow rate of the input sample through the reaction volume.

14. The method of claim 13, wherein:

the reaction volume is a serpentine flow path;

the heating includes maintaining the first temperature zone and the second temperature such that the amplification module performs a polymerase chain reaction (PCR) on the flow of the input sample through the serpentine flow path; and

a volume of the output solution produced by the amplification module is at least about 36 μ

l.

15. The method of claim 1, wherein the target amplicon is associated with at least one of chlamydia trachomatis, neisseria gonorrhoeae, trichomonas vaginalis, E. coli, Staphylococcus saprophyticus, Enterococcus faecalis, Klebsiella pneumoniae, Proteus, or P. aeruginosa.

9. A method of detecting a target nucleic acid using a stand-alone molecular diagnostic test device without any external instrument, comprising:

conveying a biological sample into a sample preparation module within the stand-alone molecular diagnostic test device; and

actuating the stand-alone molecular diagnostic test device to cause the stand-alone molecular diagnostic test device to;

lyse, within the sample preparation module, the biological sample to produce an input sample;

heat a first heating portion of a heater of an amplification module fixedly coupled within the stand-alone molecular diagnostic device to produce a first temperature zone within a first portion of a reaction volume of the amplification module;

heat a second heating portion of the heater to produce a second temperature zone within a second portion of the reaction volume;

produce a flow of the input sample within the reaction volume such that the input sample flows within the first temperature zone and the second temperature zone through at least 30 cycles to amplify the target nucleic acid within the input sample to produce an output solution containing a target amplicon, the flow of the input sample and the heater being controlled to produce at least 75 μ

l of the output solution in 10 minutes or less;

convey to a detection module within the stand-alone molecular diagnostic test device the output solution, the detection module containing a reagent formulated to produce a signal that indicates a presence of the target amplicon within the output solution, the detection module that including a detection surface configured to capture the target amplicon to produce the signal;

reading a result associated with the signal; and

discarding, after the reading, the stand-alone molecular test device.

10. The method of claim 9, wherein the reading includes viewing, via a detection window defined by a housing of the stand-alone molecular diagnostic test device, the signal from the detection surface.

11. The method of claim 9, wherein the flow of the input sample within the reaction volume is produced to thermally cycle the input sample in less than 8 minutes.

12. The method of claim 9, wherein:

the stand-alone molecular diagnostic test device includes a fluid pump disposed within a housing; and

the flow of the input sample within the reaction volume is produced by the fluid pump.

16. The method of claim 9, further comprising:

coupling the stand-alone molecular diagnostic test device to a power source.

17. A method of detecting a target nucleic acid using a stand-alone molecular diagnostic test device without any external instrument, comprising:

conveying a biological sample into a sample preparation module within the stand-alone molecular diagnostic test device; and

actuating the stand-alone molecular diagnostic test device to cause the stand-alone molecular diagnostic test device to;

lyse, within the sample preparation module, the biological sample to produce an input sample;

heat a first heating portion of a heater of an amplification module fixedly coupled within the stand-alone molecular diagnostic device to produce a first temperature zone within a first portion of a flow path of the amplification module;

heat a second heating portion of the heater to produce a second temperature zone within a second portion of the flow path;

produce a flow of the input sample within the flow path such that the input sample flows between the first temperature zone and the second temperature zone at a flow rate of at least 0.1 μ

l/sec through at least 30 cycles to amplify the target nucleic acid within the input sample to produce an output solution containing a target amplicon; and

convey to a detection module within the stand-alone molecular diagnostic test device the output solution, the detection module containing a reagent formulated to produce a signal that indicates a presence of the target amplicon within the output solution, the detection module including a detection surface configured to capture the target amplicon to produce the signal;

reading a result associated with the signal; and

discarding, after the reading, the stand-alone molecular test device.

18. The method of claim 17, wherein the flow of the input sample within the flow path is produced to thermally cycle module at least about 36 μ

l of the input sample in less than 8 minutes.

19. The method of claim 17, wherein an overall size of the stand-alone molecular diagnostic test device less than about 260 cubic centimeters.

20. The method of claim 17, wherein the amplification module includes a flow member defining the flow path, the flow member constructed from at least one of a cyclic olefin copolymer or a graphite-based material and having a thickness of less than about 0.5 mm.

21. The method of claim 17, further comprising:

coupling, before the actuating, the stand-alone molecular diagnostic test device to a power source.