Devices and methods for molecular diagnostic testing

• US 10,124,334 B2
• Filed: 03/30/2017
• Issued: 11/13/2018
• Est. Priority Date: 12/31/2014
• Status: Active Grant

• Current Assignee: Visby Medical, Inc.
• Original Assignee: Click Diagnostics, Inc.
• Inventors: Andreyev, Boris, Moravick, Keith E., Ciopyk, Brian, Briones, Victor, Loney, Gregory, de la Zerda, Adam, Ching, Jesus, Kelly, Colin, Chu, Steven, Swenson, David, Huang, Helen
• Primary Examiner(s): Hurst, Jonathan M
• Application Number:
  US15/474,083
• Publication Number:
  US 20170203297A1
• Time in Patent Office: 593 Days
• CPC Class Codes: B01L 2200/025 Align devices or objects to ensure defined positions relative to each other
• CPC Class Codes: B01L 2200/028 Modular arrangements
• CPC Class Codes: B01L 2200/0647 Handling flowable solids, e.g. microscopic beads, cells, particles
• CPC Class Codes: B01L 2200/0684 Venting, avoiding backpressure, avoid gas bubbles
• CPC Class Codes: B01L 2200/0689 Sealing
• CPC Class Codes: B01L 2200/10 Integrating sample preparation and analysis in single entity, e.g. lab-on-a-chip concept
• CPC Class Codes: B01L 2300/0627 Sensor or part of a sensor is integrated
• CPC Class Codes: B01L 2300/0654 Lenses; Optical fibres
• CPC Class Codes: B01L 2300/0672 Integrated piercing tool
• CPC Class Codes: B01L 2300/0681 Filter
• CPC Class Codes: B01L 2300/0867 Multiple inlets and one sample wells, e.g. mixing, dilution
• CPC Class Codes: B01L 2300/0883 Serpentine channels
• CPC Class Codes: B01L 2300/18 Means for temperature control
• CPC Class Codes: B01L 2300/1822 using Peltier elements
• CPC Class Codes: B01L 2300/1844 using fans
• CPC Class Codes: B01L 2400/0457 passive flow or gravitation
• CPC Class Codes: B01L 2400/0478 pistons
• CPC Class Codes: B01L 2400/0487 fluid pressure, pneumatics
• CPC Class Codes: B01L 2400/0605 check valves
• CPC Class Codes: B01L 2400/0611 duck bill valves
• CPC Class Codes: B01L 2400/0644 : rotary valves
• CPC Class Codes: B01L 3/5027 : by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip B01L3/5023 takes precedence; micromixers B01F33/30; microreactors for synthesis B01J19/0093; microcapillary devices in general B81B1/00
• CPC Class Codes: B01L 3/502715 : characterised by interfacing components, e.g. fluidic, electrical, optical or mechanical interfaces
• CPC Class Codes: B01L 3/5029 : using swabs
• CPC Class Codes: B01L 3/527 : for a plurality of reagents
• CPC Class Codes: B01L 7/52 : with provision for submitting samples to a predetermined sequence of different temperatures, e.g. for treating nucleic acid samples amplification or hybridisation processes per se C12Q1/68; controlling sequential reactions for synthesis B01J19/0046
• CPC Class Codes: B01L 7/525 : with physical movement of samples between temperature zones

Abstract

A hand-held molecular diagnostic test device includes a housing, an amplification (or PCR) module, and a detection module. The amplification module is configured to receive an input sample, and defines a reaction volume. The amplification module includes a heater such that the amplification module can perform a polymerase chain reaction (PCR) on the input sample. The detection module is configured to receive an output from the amplification module and a reagent formulated to produce a signal that indicates a presence of a target amplicon within the input sample. The amplification module and the detection module are integrated within the housing.

Claims

1. An apparatus, comprising:

a housing having an outer surface defining a detection window;

a sample input module enclosed by the housing, the sample input module defining a sample input volume that receives an input sample;

a solid control organism within the sample input volume, the solid control organism being nonpathogenic to humans and being rehydrated and mixed with the input sample when the input sample is conveyed from the sample input volume;

an amplification module fixedly coupled within the housing and configured to receive the input sample, the amplification module defining a reaction volume and including a heater, the amplification module configured to amplify a control nucleic acid within the control organism to produce a control amplicon along with amplification of a nucleic acid within the input sample to produce a target amplicon;

a reagent module within the housing, the reagent module containing a reagent formulated to produce a first visible signal indicating a presence of the target amplicon and a second visible signal indicating a presence of the control amplicon; and

a detection module that receives an output produced by the amplification module including the target amplicon and the control amplicon, the detection module including a first detection surface and a second detection surface, the first detection surface configured to interact with the target amplicon such that when the reagent is conveyed from the reagent module to the detection surface, the first visible signal is produced from the first detection surface, the second detection surface configured to interact with the control amplicon such that when the detection module contains the reagent the second visible signal is produced from the second detection surface, the detection module positioned such that the first visible signal and the second visible signal are viewable via the detection window of the housing.

2. The apparatus of claim 1, wherein:

the first detection surface includes a first capture probe associated with the target amplicon; and

the second detection surface includes a second capture probe associated with the control amplicon.

3. The apparatus of claim 1, wherein the detection module includes a detection flow cell defining a detection channel through which the output produced by the amplification module, including the target amplicon and the control amplicon, flows across the first detection surface and the second detection surface.

4. The apparatus of claim 3, wherein the detection module includes a detection heater coupled to a surface of the detection flow cell such that the detection surface is between the detection heater and the outer surface of the housing.

5. The apparatus of claim 3, further comprising:

a fluid pump disposed within the housing, the fluid pump configured to generate, within the housing, a force that causes a flow of the output produced by the amplification module.

6. The apparatus of claim 1, wherein the reaction volume is a serpentine flow channel, and the heater is coupled to the serpentine flow channel, the apparatus further comprising:

a fluid pump including an electric motor disposed within the housing, the fluid pump configured to generate, within the housing, a first force that causes a flow of the input sample within the serpentine flow channel and a second force that causes a flow of the reagent from the reagent module to the first detection surface.

7. The apparatus of claim 1, wherein the apparatus is a molecular test device and the outer surface of the housing defines a status opening, the apparatus further comprising:

a status light configured to emit a light signal associated with a status of the molecular diagnostic test device, the light signal visible via the status opening.

8. The apparatus of claim 1, wherein the reagent is formulated such that the first visible signal is a non-fluorescent signal that remains visible via the detection window for at least about 30 minutes after first being produced.

9. The apparatus of claim 1, wherein the reagent is formulated such that the first visible signal is a non-fluorescent signal produced from the first detection surface without an excitation light source within the housing.

10. The apparatus of claim 1, wherein the apparatus is devoid of any light detector positioned within the housing to detect the first visible signal.

11. The apparatus of claim 1, wherein the reaction volume is a serpentine flow channel, and the heater is coupled to the serpentine flow channel, the apparatus further comprising:

a fluid pump including an electric motor disposed within the housing, the fluid pump configured to generate, within the housing, a force that causes a flow of the input sample within the serpentine flow channel; and

a control module within the housing, the control module including a processor configured to regulate a power input to the electric motor of the fluid pump based on at least one of an encoder signal or a measured electrical signal such that the fluid pump produces a target flow rate of the input sample within the serpentine flow channel.

12. The apparatus of claim 6, wherein the first force is at least 0.13 N.

13. An apparatus, comprising:

a housing having an outer surface defining a detection window;

a solid control organism stored within a flow path enclosed by the housing, the solid control organism being nonpathogenic to humans and being rehydrated and mixed with an input sample when the input sample is conveyed through the flow path towards an amplification module;

the amplification module fixedly coupled within the housing and configured to receive the input sample, the amplification module defining a reaction volume and including a heater such that the amplification module can amplify a nucleic acid within the input sample and a control nucleic acid within the control organism to produce an output containing a target amplicon and a control amplicon;

a detection module disposed within the housing, the detection module including a first detection surface and a second detection surface, the detection module defining a detection channel through which the output produced by the amplification module flows across the first detection surface and the second detection surface, the first detection surface configured to interact with the target amplicon such that when a reagent formulated to produce a first visible signal indicating a presence of the target amplicon flows across the first detection surface, the first visible signal is produced from the first detection surface, the second detection surface configured to interact with the control amplicon such that when the detection module contains the reagent a second visible signal is produced from the second detection surface, the detection module positioned such that the first detection surface and the second detection surface are visible via the detection window of the housing; and

a fluid pump disposed within the housing, the fluid pump configured to generate a first force that causes a flow of at least one of the input sample or the output produced by the amplification module and a second force that causes a flow of the reagent across the first detection surface.

14. The apparatus of claim 13, wherein:

the amplification module includes a flow member that defines the reaction volume, the reaction volume being a serpentine flow channel; and

the heater is coupled to the flow member such that a first heating portion of the heater produces a first temperature zone within a first portion of the serpentine flow channel and a second heating portion of the heater produces a second temperature zone with a second portion of the serpentine flow channel, the first temperature zone and the second temperature zone maintained such that the flow of the input sample within the serpentine flow channel is thermally cycled.

15. The apparatus of claim 14, wherein the flow member is constructed from at least one of a cyclic olefin copolymer or a graphite-based material and has a thickness of less than about 0.5 mm.

16. The apparatus of claim 13, wherein:

the first detection surface includes a first capture probe associated with the target amplicon; and

the second detection surface includes a second capture probe associated with the control amplicon.

17. The apparatus of claim 13, wherein the first visible signal is a non-fluorescent signal produced from the first detection surface without an excitation light source within the housing.

18. The apparatus of claim 13, wherein:

the detection module includes a detection flow cell and a detection heater, the detection flow cell defining the detection channel and including the first detection surface therein, the detection heater coupled to a surface of the detection flow cell such that the first detection surface is between the detection heater and the outer surface of the housing.

19. The apparatus of claim 13, wherein the housing, the amplification module, the detection module, and the fluid pump are collectively configured for one and only one use and are disposable.

20. The apparatus of claim 13, wherein the apparatus is devoid of any light detector positioned within the housing to detect the first visible signal.

21. The apparatus of claim 13, further comprising:

a reagent module within the housing, the reagent module containing the reagent.

22. The apparatus of claim 14, further comprising:

a control module within the housing, the control module including a processor configured to regulate a power input to the fluid pump based on at least one of an encoder signal or a measured electrical signal such that the fluid pump produces a target flow rate of the input sample within the serpentine flow channel.

23. The apparatus of claim 22, wherein the target flow rate is between 0.3 μ

L/sec and 0.5 μ

L/sec.

24. An apparatus, comprising:

a housing defining a detection window;

a sample input module enclosed by the housing, the sample input module defining a sample input volume that receives an input sample;

a solid control organism within the sample input module, the solid control organism being nonpathogenic to humans and being rehydrated by and mixed with the input sample to form an input solution when the input sample is conveyed from the sample input volume;

an amplification module fixedly coupled within the housing and configured to receive the input solution including the control organism from the sample input module, the amplification module including a first flow member and a heater, the first flow member defining a reaction volume, the heater coupled to the first flow member such that the amplification module can amplify a target nucleic acid within the input solution to produce a target amplicon and a control nucleic acid within the control organism to produce a control amplicon; and

a detection module enclosed by the housing and configured to receive an output produced by the amplification module including the target amplicon and the control amplicon, the detection module including a second flow member including a first detection surface configured to capture the target amplicon such that when a reagent formulated to produce a first visible signal indicating a presence of the target amplicon is present at the first detection surface, the first visible signal is produced, the second flow member including a second detection surface configured to capture the control amplicon such that when the reagent is present at the second detection surface, a second visible signal is produced, the first detection surface and the second detection surface each being visible via the detection window of the housing.

25. The apparatus of claim 24, further comprising:

a fluid pump disposed within the housing, the fluid pump including a motor within the housing, the motor configured generate a force that causes a flow of the input solution including the solid control organism within the reaction volume of the amplification module.

26. The apparatus of claim 25, wherein the fluid pump is configured to produce a flow of the output produced by the amplification module within the second flow member.

27. The apparatus of claim 24, wherein:

the reaction volume is a serpentine flow channel; and

the heater is coupled to the first flow member such that a first heating portion of the heater produces a first temperature zone within a first portion of the serpentine flow channel and a second heating portion of the heater produces a second temperature zone with a second portion of the serpentine flow channel, the first temperature zone and the second temperature zone maintained such that the flow of the input sample within the serpentine flow channel is thermally cycled.

28. The apparatus of claim 24, wherein the heater is a first heater, the apparatus further comprising:

a lysis module enclosed by the housing, the lysis module including a second heater and defining a lysis volume, the second heater configured to heat the input solution; and

a mixing module containing a PCR reagent, the mixing module downstream of the sample input module and the lysis module;

the mixing defining a mixing chamber within which the input solution, including the solid control organism, and the PCR reagent are mixed, the input solution conveyed from the mixing module to the amplification module.

29. The apparatus of claim 24, wherein the solid control organism is a bead retained with a fluidic path of the sample input module.

30. The apparatus of claim 24, wherein the detection module includes an absorbent member formulated to receive the output produced by the amplification module, including the target amplicon and the control amplicon.

31. The apparatus of claim 30, further comprising:

a fluid pump disposed within the housing, the fluid pump configured to generate, within the housing, a force that causes a flow of the output produced by the amplification module.