System for determining a cancer diagnosis score derived from stained nuclei
First Claim
Patent Images
1. A non-transitory computer-readable storage medium storing one or more computer programs adapted to cause a processor based system to execute steps comprising:
- determining, from tissue sample image information in an optical density format, a first number of nuclei within the tissue sample image information;
determining, from the tissue sample image information in the optical density format, positive stain image information indicating positive stained content of the tissue sample image information;
determining, from the positive stain image information, a second number of positive stained nuclei within the tissue sample image information;
displaying on a display screen a displayed image of at least a portion of the positive stain image information, wherein the displayed image includes a plurality of pixels having values associated with analyzing the tissue sample image information to generate a cancer diagnosis score;
identifying one or more identified pixels corresponding to parts of the displayed image that meet a cancer scoring guideline by using the associated values of the pixels;
calculating a percentage of positive stained nuclei based at least in part on the first number and the second number, and the one or more identified pixels;
generating a cancer diagnosis score based at least in part on the percentage of positive stained nuclei; and
outputting the cancer diagnosis score.
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Abstract
Certain aspects of an apparatus and method for automatic ER/PR scoring of tissue samples may include for determining a cancer diagnosis score comprising identifying a positive stained nucleus in a slide image of the tissue sample, identifying a negative stained nucleus in the slide image, computing a proportion score based on number of the positive stained nucleus identified and number of the negative stained nucleus identified and determining the cancer diagnosis score based on the proportion.
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Citations
29 Claims
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1. A non-transitory computer-readable storage medium storing one or more computer programs adapted to cause a processor based system to execute steps comprising:
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determining, from tissue sample image information in an optical density format, a first number of nuclei within the tissue sample image information; determining, from the tissue sample image information in the optical density format, positive stain image information indicating positive stained content of the tissue sample image information; determining, from the positive stain image information, a second number of positive stained nuclei within the tissue sample image information; displaying on a display screen a displayed image of at least a portion of the positive stain image information, wherein the displayed image includes a plurality of pixels having values associated with analyzing the tissue sample image information to generate a cancer diagnosis score; identifying one or more identified pixels corresponding to parts of the displayed image that meet a cancer scoring guideline by using the associated values of the pixels; calculating a percentage of positive stained nuclei based at least in part on the first number and the second number, and the one or more identified pixels; generating a cancer diagnosis score based at least in part on the percentage of positive stained nuclei; and outputting the cancer diagnosis score. - View Dependent Claims (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12)
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13. A method for causing a processor-based system to perform the following acts:
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determining, from tissue sample image information in an optical density format, a first number of nuclei within the tissue sample image information; determining, from the tissue sample image information in the optical density format, positive stain image information indicating positive stained content of the tissue sample image information; determining, from the positive stain image information, a second number of positive stained nuclei within the tissue sample image information; displaying on a display screen a displayed image of at least a portion of the positive stain image information, wherein the displayed image includes a plurality of pixels having values associated with analyzing the tissue sample image information to generate a cancer diagnosis score; identifying one or more identified pixels corresponding to parts of the displayed image that meet a cancer scoring guideline by using the associated values of the pixels; calculating a percentage of positive stained nuclei based at least in part on the first number and the second number, and the one or more identified pixels; generating a cancer diagnosis score based at least in part on the percentage of positive stained nuclei; and outputting the cancer diagnosis score. - View Dependent Claims (14, 15)
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16. An apparatus comprising:
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one or more processors; one or more non-transitory computer-readable storage media storing one or more instructions executable by the one or more processors for; determining, from tissue sample image information in an optical density format, a first number of nuclei within the tissue sample image information; determining, from the tissue sample image information in the optical density format, positive stain image information indicating positive stained content of the tissue sample image information; determining, from the positive stain image information, a second number of positive stained nuclei within the tissue sample image information; displaying on a display screen a displayed image of at least a portion of the positive stain image information, wherein the displayed image includes a plurality of pixels having values associated with analyzing the tissue sample image information to generate a cancer diagnosis score; identifying one or more identified pixels corresponding to parts of the displayed image that meet a cancer scoring guideline by using the associated values of the pixels; calculating a percentage of positive stained nuclei based at least in part on the first number and the second number, and the one or more identified pixels; generating a cancer diagnosis score based at least in part on the percentage of positive stained nuclei; and outputting the cancer diagnosis score. - View Dependent Claims (17, 18)
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19. A non-transitory computer-readable storage medium storing one or more computer programs adapted to cause a processor based system to execute steps comprising:
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determining, from tissue sample image information in an optical density format, a first number of nuclei within the tissue sample image information; identifying nuclei based in part on a size of one or more nuclei; determining, from the tissue sample image information in the optical density format, positive stain image information indicating positive stained content of the tissue sample image information; determining, from the positive stain image information, a second number of positive stained nuclei within the tissue sample image information; displaying on a display screen a displayed image of at least a portion of the positive stain image information, wherein the displayed image includes a plurality of pixels having values associated with analyzing the tissue sample image information to generate a cancer diagnosis score; identifying one or more identified pixels corresponding to parts of the displayed image that meet a cancer scoring guideline by using the associated values of the pixels; calculating a percentage of positive stained nuclei based at least in part on the first number and the second number, and the one or more identified pixels; receiving the tissue sample image information from a microscope, where the tissue sample image information includes at least a portion of image information of tissue stained with an immunohistochemical stain, and where the tissue sample image information includes an indication of levels in the stained tissue of a marker for a particular cancer; generating a cancer diagnosis score based at least in part on the percentage of positive stained nuclei; and outputting the cancer diagnosis score.
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20. An apparatus comprising:
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one or more processors; one or more non-transitory computer-readable storage media storing one or more instructions executable by the one or more processors for; determining, from tissue sample image information in an optical density format, a first number of nuclei within the tissue sample image information; identifying nuclei based in part on a size of one or more nuclei; determining, from the tissue sample image information in the optical density format, positive stain image information indicating positive stained content of the tissue sample image information; determining, from the positive stain image information, a second number of positive stained nuclei within the tissue sample image information; displaying on a display screen a displayed image of at least a portion of the positive stain image information, wherein the displayed image includes a plurality of pixels having values associated with analyzing the tissue sample image information to generate a cancer diagnosis score; identifying one or more identified pixels corresponding to parts of the displayed image that meet a cancer scoring guideline by using the associated values of the pixels; calculating a percentage of positive stained nuclei based at least in part on the first number and the second number, and the one or more identified pixels; receiving the tissue sample image information from a microscope, where the tissue sample image information includes at least a portion of image information of tissue stained with an immunohistochemical stain, and where the tissue sample image information includes an indication of levels in the stained tissue of a marker for a particular cancer; generating a cancer diagnosis score based at least in part on the percentage of positive stained nuclei; and outputting the cancer diagnosis score.
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21. A method for causing a processor-based system to perform the following acts:
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determining, from tissue sample image information in an optical density format, a first number of nuclei within the tissue sample image information; identifying nuclei based in part on a size of one or more nuclei; determining, from the tissue sample image information in the optical density format, positive stain image information indicating positive stained content of the tissue sample image information; determining, from the positive stain image information, a second number of positive stained nuclei within the tissue sample image information; displaying on a display screen a displayed image of at least a portion of the positive stain image information, wherein the displayed image includes a plurality of pixels having values associated with analyzing the tissue sample image information to generate a cancer diagnosis score; identifying one or more identified pixels corresponding to parts of the displayed image that meet a cancer scoring guideline by using the associated values of the pixels; calculating a percentage of positive stained nuclei based at least in part on the first number and the second number, and the one or more identified pixels; receiving the tissue sample image information from a microscope, where the tissue sample image information includes at least a portion of image information of tissue stained with an immunohistochemical stain, and where the tissue sample image information includes an indication of levels in the stained tissue of a marker for a particular cancer; generating a cancer diagnosis score based at least in part on the percentage of positive stained nuclei; and outputting the cancer diagnosis score.
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22. A non-transitory computer-readable storage medium storing one or more computer programs adapted to cause a processor based system to execute steps comprising:
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determining, from tissue sample image information in an optical density format, a first number of nuclei within the tissue sample image information; determining, from the tissue sample image information in the optical density format, positive stain image information indicating positive stained content of the tissue sample image information; determining, from the positive stain image information, a second number of positive stained nuclei within the tissue sample image information; displaying on a display screen a displayed image of at least a portion of the positive stain image information, wherein the displayed image includes a plurality of pixels having values associated with analyzing the tissue sample image information to generate a cancer diagnosis score; identifying one or more identified pixels corresponding to parts of the displayed image that meet a cancer scoring guideline by using the associated values of the pixels; calculating a percentage of positive stained nuclei based at least in part on the first number and the second number, and the one or more identified pixels; determining, from the positive stain image information, an intensity level of positive stain, the intensity level being selected from at least three predetermined levels indicating strength of the positive stain in the optical density format; generating a cancer diagnosis score based at least in part on the percentage of positive stained nuclei and the intensity level; and outputting the cancer diagnosis score. - View Dependent Claims (23, 24, 25, 26, 27, 28, 29)
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Specification