Methods for suspension cultures of human pluripotent stem cells

• US 10,377,989 B2
• Filed: 12/30/2013
• Issued: 08/13/2019
• Est. Priority Date: 12/31/2012
• Status: Active Grant

• Current Assignee: Janssen Biotech, Inc. (Johnson & Johnson)
• Original Assignee: Janssen Biotech, Inc. (Johnson & Johnson)
• Inventors: Fryer, Benjamin, Laniauskas, Daina, Blackmoore, Marcia, Wang, Haiyun, LiLova, Kostadinka, Nelson, Shelley, Rosocha, Elizabeth
• Primary Examiner(s): Moloye, Titilayo
• Application Number:
  US13/998,974
• Publication Number:
  US 20140242693A1
• Time in Patent Office: 2,052 Days
• CPC Class Codes: A61P 3/10 for hyperglycaemia, e.g. antidiabetics
• CPC Class Codes: C12N 2500/02 Atmosphere, e.g. low oxygen conditions
• CPC Class Codes: C12N 2500/25 Insulin-transferrin; Insulin-transferrin-selenium
• CPC Class Codes: C12N 2500/34 Sugars
• CPC Class Codes: C12N 2501/117 Keratinocyte growth factors (KGF-1, i.e. FGF-7; KGF-2, i.e. FGF-12)
• CPC Class Codes: C12N 2501/15 Transforming growth factor beta (TGF-β)
• CPC Class Codes: C12N 2501/16 Activin; Inhibin; Mullerian inhibiting substance
• CPC Class Codes: C12N 2501/19 Growth and differentiation factors [GDF]
• CPC Class Codes: C12N 2501/385 of the family of the retinoic acid recptor, e.g. RAR, RXR; Peroxisome proliferator-activated receptor [PPAR]
• CPC Class Codes: C12N 2501/415 Wnt; Frizzeled
• CPC Class Codes: C12N 2501/42 Notch; Delta; Jagged; Serrate
• CPC Class Codes: C12N 2501/727 Kinases (EC 2.7.)
• CPC Class Codes: C12N 2501/999 Small molecules not provided for elsewhere
• CPC Class Codes: C12N 2506/02 from embryonic cells
• CPC Class Codes: C12N 2506/45 from artificially induced pluripotent stem cells
• CPC Class Codes: C12N 2509/00 Methods for the dissociation of cells, e.g. specific use of enzymes
• CPC Class Codes: C12N 2513/00 3D culture
• CPC Class Codes: C12N 2531/00 Microcarriers
• CPC Class Codes: C12N 5/0606 Pluripotent embryonic cells, e.g. embryonic stem cells [ES] embryonic germ cells C12N5/0611, induced pluripotent stem cells C12N5/0696
• CPC Class Codes: C12N 5/0677 Three-dimensional culture, tissue culture or organ culture; Encapsulated cells

Abstract

The present invention provides methods of preparing aggregated pluripotent stem cell clusters for differentiation.

Claims

1. An in vitro method of producing three-dimensional cell clusters of pluripotent stem cells comprising the steps of:

a. treating pluripotent stem cells cultured in a planar adherent culture with a chelating agent or enzyme to release cell aggregates from the planar adherent culture;

b. suspending the cell aggregates from the planar adherent culture in a culture medium in the presence of a Rho-kinase inhibitor without centrifuging the cell aggregates and without dissociating the cell aggregates to single cells;

c. diluting the culture using culture media and a Rho-kinase inhibitor to a concentration of cells from about 1 to about 1.5 million cells/ml;

d. transferring the suspension of cell aggregates to a dynamic suspension culture; and

e. expanding the suspension of cell aggregates in the dynamic suspension culture to generate cell clusters, wherein the cell clusters maintain pluripotency.

2. The method of claim 1, wherein the pluripotent stem cells are treated with an enzyme selected from neutral protease or Accutase.

3. The method of claim 2, wherein the enzyme is neutral protease.

4. The method of claim 1, wherein the pluripotent stem cells are selected from the group consisting of induced pluripotent stem cells, human umbilical cord tissue-derived cells, parthenotes, human embryonic stem cells (hES) and amniotic fluid derived-cells.

5. The method of claim 4, wherein the cells are H1 hES.

6. The method of claim 1, wherein the cells in the cell cluster express CD9, SSEA4, TRA-1-60, and TRA-1-81, and lack expression of CXCR4.

7. The method of claim 1, wherein the pluripotent stem cells are treated with a chelating agent.

8. The method of claim 7, wherein the chelating agent is ethylenediaminetetraacetic acid (EDTA).

23. The method of claim 1, wherein the dynamic agitated suspension culture system comprises microcarriers.

9. A method of differentiating cell clusters of pluripotent stem cells in a dynamically agitated suspension culture system comprising:

a. treating pluripotent stem cells cultured in a planar adherent culture with a chelating agent or enzyme to release cell aggregates from the planar adherent culture;

b. suspending the cell aggregates from the planar adherent culture in culture medium in the presence of a Rho-kinase inhibitor without centrifuging the cell aggregates and without dissociating the cell aggregates to single cells;

c. diluting the culture using culture media and a Rho-kinase inhibitor to a concentration of cells from about 1 to about 1.5 million cells/ml;

d. transferring the suspension of cell aggregates to a dynamic agitated suspension culture;

e. expanding the suspension of cell aggregates in the dynamic agitated suspension culture to generate pluripotent cell clusters, wherein the cell clusters express CD9, SSEA4, TRA-1-60, and TRA-1-81, and lack expression of CXCR4; and

f. differentiating the pluripotent cell clusters in the dynamic agitated suspension culture system to generate a gut tube cell population, a neural precursor cell population or a cardiomyocyte precursor population.

10. The method of claim 9, wherein the pluripotent stem cells are selected from the group consisting of induced pluripotent stem cells, human umbilical cord tissue-derived cells, parthenotes, human embryonic stem cells (hES) and amniotic fluid derived-cells.

11. The method of claim 9, wherein the method generates a gut tube cell population which expresses β

cell transcription factors.

12. The method of claim 11, wherein the transcription factors are PDX1 and/or NKX6.1.

13. The method of claim 9, wherein the method comprises differentiating the pluripotent cell clusters in a dynamic agitated suspension culture system to generate a gut tube cell population.

14. The method of claim 9, wherein the method comprises differentiating the pluripotent cell clusters in a dynamic agitated suspension culture system to generate a neural precursor cell population.

15. The method of claim 9, wherein the method comprises differentiating the pluripotent cell clusters in a dynamic agitated suspension culture system to generate a cardiomyocyte precursor population.

16. The method of claim 9, wherein the pluripotent stem cells are treated with a chelating agent.

17. The method of claim 16, wherein the chelating agent is EDTA.

18. The method of claim 9, wherein the pluripotent stem cells are treated with an enzyme.

19. The method of claim 18, wherein the enzyme is a neutral protease or Accutase.

20. The method of claim 9, wherein the step of differentiating comprises culturing at an oxygen range from about hypoxia to about 30% of ambient, a lipid in the range of 0.1% to about 2%, or the combination thereof.

21. The method of claim 13, wherein the method comprises differentiating the three-dimensional pluripotent stem cell clusters to definitive endoderm cells in a culture medium supplemented with either (i) a cyclic aniline-pyridinotriazine and GDF8 or (ii) WNT3A and activin A.

22. The method of claim 21, wherein the cyclic aniline-pyridinotriazine is 14-Prop-2-en-1-yl-3,5,7,14,17,23,27-heptaazatetracyclo[19.3.1.1˜

2,6-˜

.1˜

8,12.˜

[heptacosa-1(25),2(27),3,5,8(26),9,11,21,23-non-aen-16-one.

24. The method of claim 9, wherein the dynamic agitated suspension culture system comprises microcarriers.

25. An in vitro method of producing pluripotent stem cell clusters comprising the steps of:

a. treating pluripotent stem cells cultured in a planar adherent culture with an enzymatic or chelating agent at room temperature for a time sufficient to release the pluripotent stem cells as cell aggregates;

b. removing said enzymatic or chelating agent;

c. adding culture media supplemented with a Rho-kinase inhibitor to the cell aggregates and suspending the cell aggregates in culture without centrifuging the cell aggregates and without dissociating the cell aggregates to single cells;

d. transferring the suspension of cell aggregates to a dynamic suspension culture system; and

e. expanding the suspension of cell aggregates in the dynamic suspension culture to generate cell clusters, wherein the cells in the cell clusters are pluripotent.

26. The method of claim 25, wherein the method comprises use of chelating agent.

27. The method of claim 26, wherein the chelating agent is EDTA.

28. The method of claim 27, wherein the method comprises use of an enzymatic agent.

29. The method of claim 25, wherein the enzymatic agent is a neutral protease or Accutase.

30. The method of claim 25, wherein the pluripotent stem cells are selected from the group consisting of induced pluripotent stem cells, human umbilical cord tissue-derived cells, parthenotes, human embryonic stem cells (hES) and amniotic fluid derived-cells.

31. The method of claim 25 further comprising differentiating the three-dimensional pluripotent stem cell clusters in the dynamic agitated suspension culture system to generate a gut tube cell population, a neural precursor cell population or a cardiomyocyte precursor population.