Methods for producing canola plants with clubroot resistance and compositions thereof

• US 10,415,101 B2
• Filed: 04/27/2016
• Issued: 09/17/2019
• Est. Priority Date: 04/30/2015
• Status: Active Grant

• Current Assignee: Monsanto Technology LLC (Bayer AG)
• Original Assignee: Monsanto Technology LLC (Bayer AG)
• Inventors: Christianson, Jed A., Coulibaly, Issa, Nino-Liu, David O., Wu, Chunren X.
• Primary Examiner(s): Stankovic, Bratislav
• Application Number:
  US15/570,084
• Publication Number:
  US 20180305774A1
• Time in Patent Office: 1,238 Days
• Field of Search: None
• CPC Class Codes: A01H 1/045 using molecular markers
• CPC Class Codes: A01H 5/10 Seeds
• CPC Class Codes: A01H 6/202 Brassica napus [canola]
• CPC Class Codes: C12Q 1/6895 for plants, fungi or algae
• CPC Class Codes: C12Q 2600/13 Plant traits
• CPC Class Codes: C12Q 2600/156 Polymorphic or mutational markers
• CPC Class Codes: C12Q 2600/172 Haplotypes

Abstract

The present disclosure is in the field of plant breeding and disease resistance. The disclosure provides methods for breeding canola plants having clubroot resistance using marker-assisted selection. The disclosure further provides germplasm resistant to various Plasmodiophora brassicae pathotypes including pathogtype 5x. The disclosure also provides markers associated with clubroot resistance loci for introgressing these loci into elite germplasm in a breeding program, thus producing novel clubroot resistant germplasm, e.g., spring canola varieties resistant to pathogtype 5x.

Claims

1. A method for producing a clubroot-resistant canola plant, said method comprising:

a) crossing a first clubroot-resistant canola plant comprising at least one clubroot resistance Quantitative Trait Locus (QTL) linked to a polymorphic marker selected from the group consisting of SEQ ID NOs;

1 to 7 with a second canola plant to produce a population of canola plants;

b) detecting in said population of canola plants a marker linked within 10 cM to said polymorphic marker selected from the group consisting of SEQ ID NOs;

1 to 7; and

c) selecting a clubroot-resistant canola plant comprising said at least one clubroot resistance QTL from said population;

wherein said clubroot resistance QTL is linked to at least one polymorphic marker selected from the grouping consisting of;

a G nucleotide at position 61 of SEQ ID NO;

1;

a C nucleotide at position 61 of SEQ ID NO;

2;

an A nucleotide at position 61 of SEQ ID NO;

3;

a G nucleotide at position 61 of SEQ ID NO;

4;

a G nucleotide at position 150 of SEQ ID NO;

5;

a G nucleotide at position 61 of SEQ ID NO;

6; and

an A nucleotide at position 61 of SEQ ID NO;

7.

2. The method of claim 1, wherein said marker is linked within 5 cM of said polymorphic marker selected from the group consisting of SEQ ID NOs:

1 to 7.

3. The method of claim 1, wherein said selected canola plant further comprises at least one clubroot resistance QTL located in a chromosomal segment flanked by SEQ ID NOs:

9 and 12.

4. The method of claim 1, wherein said step (b) comprises genotyping said population of canola plants via a marker detection assay to determine said marker.

5. The method of claim 1, wherein said step (b) comprises detecting a haplotype.

6. The method of claim 5, wherein said haplotype comprises resistance alleles of any two of marker loci SEQ ID NOs:

1 to 7.

7. The method of claim 1, wherein said selected canola plant is a Brassica napus plant or a Brassica rapa plant.

8. The method of claim 1, wherein said selected canola plant is from a spring canola variety.

9. The method of claim 1, wherein said selected canola plant is highly resistant, resistant or at least moderately resistant to at least one P. brassicae pathotype selected from the group consisting of pathotypes 2, 3, 5, 5x, 6, 8, and G.

10. The method of claim 1, further comprising producing a population of progeny from said selected canola plant.

11. The method of claim 1, wherein said selected canola plant further comprises a second clubroot resistance locus selected from the group consisting of Crr1, Crr2, Crr3, Crr4, CRa, CRb, CRc, and CRk.

12. The method of claim 5, wherein said haplotype comprises resistance alleles of SEQ ID NOs:

1 and 2.

13. The method of claim 5, wherein said haplotype comprises resistance alleles of SEQ ID NOs:

1 and 3.

14. The method of claim 5, wherein said haplotype comprises resistance alleles of SEQ ID NOs:

1 and 4.

15. The method of claim 5, wherein said haplotype comprises resistance alleles of SEQ ID NOs:

1 and 5.

16. The method of claim 5, wherein said haplotype comprises resistance alleles of SEQ ID NOs:

1 and 6.

17. The method of claim 5, wherein said haplotype comprises resistance alleles of SEQ ID NOs:

1 and 7.

18. The method of claim 1, wherein said marker is linked within 4 cM to a sequence selected from the group consisting of SEQ ID NOs:

1 to 7.

19. The method of claim 1, wherein said marker is linked within 1 cM to a sequence selected from the group consisting of SEQ ID NOs:

1 to 7.

20. The method of claim 1, wherein said marker is a sequence selected from the group consisting of SEQ ID NOs:

1 to 7.