Oncolytic herpes simplex virus and therapeutic uses thereof

• US 10,456,432 B2
• Filed: 09/10/2018
• Issued: 10/29/2019
• Est. Priority Date: 09/08/2011
• Status: Active Grant

• Current Assignee: Benevir Biopharm, Inc. (Johnson & Johnson), New York University
• Original Assignee: New York University
• Inventors: Mohr, Ian J., Mulvey, Matthew C.
• Primary Examiner(s): Gill, Rachel B
• Application Number:
  US16/126,370
• Publication Number:
  US 20180369301A1
• Time in Patent Office: 414 Days
• CPC Class Codes: A61K 2039/5256 expressing foreign proteins
• CPC Class Codes: A61K 2039/572 cytotoxic response
• CPC Class Codes: A61K 2039/585 wherein the target is cancer
• CPC Class Codes: A61K 35/763 Herpes virus
• CPC Class Codes: A61P 35/00 Antineoplastic agents
• CPC Class Codes: C12N 15/86 Viral vectors
• CPC Class Codes: C12N 2710/16632 Use of virus as therapeutic agent, other than vaccine, e.g. as cytolytic agent
• CPC Class Codes: C12N 7/00 Viruses; Bacteriophages; Compositions thereof; Preparation or purification thereof preparing medicinal viral antigen or antibody compositions, e.g. virus vaccines, A61K39/00

Abstract

The present invention relates to variants of herpes simplex virus (HSV) that selectively infect and replicate in cancer cells, including HSV strains that selectively infect and replicate in bladder cancer cells. Preferred HSV of the invention have intact endogenous Us11 and Us12 genes and have genes encoding ICP34.5 replaced with a gene encoding Us11 fused to an HSV immediate early (IE) promoter. The variant HSV of the invention also comprise one or more additional heterologous genes encoding immunomodulatory polypeptides. Methods and compositions using these variant HSV, for example, for treating cancer in a subject, are also provided.

Claims

1. A variant oncolytic herpes simplex virus (HSV) comprising functionally inactive ICP34.5 encoding genes, wherein at least one of the ICP34.5 encoding genes is rendered functionally inactive by the insertion of an expression cassette comprising:

(a) a US11 encoding polynucleotide operably associated with an immediate early (IE) promoter;

(b) a virus-derived heterologous transporter associated with antigen presentation (TAP) inhibitor encoding polynucleotide; and

(c) a CD40 ligand encoding polynucleotide.

2. The variant HSV of claim 1, wherein the variant HSV is derived from HSV-1.

3. The variant HSV of claim 2, wherein the variant HSV is derived from wild-type HSV-1, HSV-1 strain F, HSV-1 strain 17, HSV-1 KOS, HSV-1 strain Patton, or a HSV-1 clinical strain.

4. The variant HSV of claim 1, wherein the variant HSV is at least 70% identical to HSV-1 or HSV-2.

5. The variant HSV of claim 1, wherein the variant HSV is at least 70% identical to SEQ ID NO:

1.

6. The variant HSV of claim 1, wherein the heterologous TAP inhibitor is a herpes virus UL49.5 polypeptide, a cytomegalovirus (CMV) US6 polypeptide, or a BNLF2a polypeptide.

7. The variant HSV of claim 6, wherein the UL49.5 polypeptide is derived from bovine herpes virus, pseudorabies virus, equine herpes virus 1, equine herpes virus 4, bubaline herpesvirus 1, cervid herpes virus 1, or felid herpesvirus 1.

8. The variant HSV of claim 7, wherein the UL49.5 polypeptide is derived from bovine herpesvirus.

9. The variant HSV of claim 1, wherein the heterologous TAP inhibitor encoding polynucleotide is operably associated with a cellular or viral promoter.

10. The variant HSV of claim 9, wherein the cellular or viral promoter is a CMV promoter, Moloney Murine Leukemia Virus (MMLV) Long Terminal Repeat (LTR) promoter, a Rous Sarcoma Virus (RSV) promoter, an α

0 promoter, an α

4 promoter, an α

22 promoter, an α

27 promoter, an α

47 Immediate Early (IE) promoter, or an Elongation Factor 1 alpha (EF1α

) p.

11. The variant HSV of claim 1, wherein the variant HSV comprises an intact US12 encoding gene.

12. The variant HSV of claim 1, wherein the variant HSV comprises an additional US11 encoding polynucleotide operably associated with a late promoter.

13. The variant HSV of claim 1, wherein the IE promoter is an α

0 promoter, an α

4 promoter, an α

22 promoter, an α

27 promoter, an α

47 IE promoter, an EF1a promoter, or a CMV promoter.

14. The variant HSV of claim 1, wherein the variant HSV further comprises a Granulocyte-Macrophage Colony-Stimulating Factor (GM-CSF) encoding polynucleotide.

15. The variant HSV of claim 1, wherein the CD40 ligand encoding polynucleotide is operably associated with a cellular or viral promoter.

16. The variant HSV of claim 15, wherein the cellular or viral promoter is a CMV promoter, a MMLV LTR promoter, a RSV promoter, an α

0 promoter, an α

4 promoter, an α

22 promoter, an α

27 promoter, an α

47 IE promoter, or an EF1α

promoter.

17. The variant HSV of claim 1, wherein the CD40 ligand encoding polynucleotide is operably associated with an inducible promoter.

18. The variant HSV of claim 1, wherein the US11 encoding polynucleotide, the heterologous TAP inhibitor encoding polynucleotide, and the CD40 ligand encoding polynucleotide are inserted in the expression cassette in the same orientation.

19. The variant HSV of claim 18, wherein the US11 encoding polynucleotide, the heterologous TAP inhibitor encoding polynucleotide, and the CD40 ligand encoding polynucleotide are operably associated with the same promoter.

20. The variant HSV of claim 19, wherein the same promoter is the CMV promoter.

21. The variant HSV of claim 19, wherein the same promoter is selected from a MMLV LTR promoter, a RSV promoter, an α

0 promoter, an α

4 promoter, an α

22 promoter, an α

27 promoter, an α

47 IE promoter, or an EF1α

promoter.

22. The variant HSV of claim 1, wherein the second ICP34.5 gene is rendered functionally inactive by the insertion of a second expression cassette comprising:

(a) a second US11 encoding polynucleotide operably associated with an immediate early (IE) promoter;

(b) a second virus-derived heterologous TAP inhibitor encoding polynucleotide; and

(c) a second CD40 ligand encoding polynucleotide.

23. The variant HSV of claim 22, wherein the second heterologous TAP inhibitor is a herpes virus UL49.5 polypeptide, a CMV US6 polypeptide, or a BNLF2a polypeptide.

24. The variant HSV of claim 23, wherein the UL49.5 polypeptide is derived from bovine herpes virus, pseudorabies virus, equine herpes virus 1, equine herpes virus 4, bubaline herpesvirus 1, cervid herpes virus 1, or felid herpesvirus 1.

25. The variant HSV of claim 24, wherein the UL49.5 polypeptide is derived from bovine herpesvirus.

26. The variant HSV of claim 22, wherein the second heterologous TAP inhibitor encoding polynucleotide is operably associated with a cellular or viral promoter.

27. The variant HSV of claim 26, wherein the cellular or viral promoter is a CMV promoter, a MMLV LTR promoter, a RSV promoter, an α

0 promoter, an α

4 promoter, an α

22 promoter, an α

27 promoter, an α

47 IE promoter, or an EF1α

promoter.

28. The variant HSV of claim 22, wherein the IE promoter is an α

0 promoter, an α

4 promoter, an α

22 promoter, an α

27 promoter, an α

47 IE promoter, an EF1α

promoter, or a CMV promoter.

29. The variant HSV of claim 22, wherein the second expression cassette further comprises a GM-CSF encoding polynucleotide.

30. The variant HSV of claim 22, wherein the second CD40 ligand encoding polynucleotide is operably associated with a cellular or viral promoter.

31. The variant HSV of claim 30, wherein the cellular or viral promoter is a CMV promoter, a MMLV LTR promoter, a RSV promoter, an α

0 promoter, an α

4 promoter, an α

22 promoter, an α

27 promoter, an α

47 IE promoter, or an EF1α

promoter.

32. The variant HSV of claim 22, wherein the second CD40 ligand encoding polynucleotide is operably associated with an inducible promoter.

33. The variant HSV of claim 22, wherein the second US11 encoding polynucleotide, the second heterologous TAP inhibitor encoding polynucleotide, and the second CD40 ligand encoding polynucleotide are inserted in the second expression cassette in the same orientation.

34. The variant HSV of claim 33, wherein the second US11 encoding polynucleotide, the second heterologous TAP inhibitor encoding polynucleotide, and the second CD40 ligand encoding polynucleotide are operably associated with the same promoter.

35. The variant HSV of claim 34, wherein the same promoter is the CMV promoter.

36. The variant HSV of claim 34, wherein the same promoter is selected from a MMLV LTR promoter, a RSV promoter, an α

0 promoter, an α

4 promoter, an α

22 promoter, an α

27 promoter, an α

47 IE promoter, or an EF1α

promoter.

37. A pharmaceutical formulation comprising the variant HSV of claim 1 and a pharmaceutically acceptable carrier.

38. A method of treating a patient suffering from cancer comprising administering to the patient the pharmaceutical composition of claim 37.

39. The method of claim 38, wherein the cancer is selected from breast, brain, cervix, colon, head &

neck, liver, kidney, lung, non-small cell lung, melanoma, mesothelioma, ovary, sarcoma, stomach, or uterus.

40. The method of claim 38, wherein the cancer is selected from Medulloblastoma, Hodgkin'"'"'s Disease, Non-Hodgkin'"'"'s Lymphoma, multiple myeloma, neuroblastoma, rhabdomyosarcoma, primary thrombocytosis, primary macroglobulinemia, a primary brain tumor, malignant pancreatic insulanoma, malignant carcinoid, urinary bladder cancer, testicular cancer, lymphomas, thyroid cancer, esophageal cancer, genitourinary tract cancer, malignant hypercalcemia, endometrial cancer, adrenal cortical cancer, neoplasms of the endocrine and exocrine pancreas, and prostate cancer.