Microscope and method for high-resolution 3-D fluorescence microscopy

• US 10,459,208 B2
• Filed: 12/13/2012
• Issued: 10/29/2019
• Est. Priority Date: 01/11/2012
• Status: Active Grant

• Current Assignee: Carl Zeiss Microscopy GmbH (Carl-Zeiss-Stiftung)
• Original Assignee: Carl Zeiss Microscopy GmbH (Carl-Zeiss-Stiftung)
• Inventors: Kalkbrenner, Thomas, Wolleschensky, Ralf
• Primary Examiner(s): Werner, David N
• Application Number:
  US14/371,816
• Publication Number:
  US 20150002632A1
• Time in Patent Office: 2,511 Days
• Field of Search: None
• CPC Class Codes: G01N 21/64 Fluorescence; Phosphorescence
• CPC Class Codes: G01N 21/6402 Atomic fluorescence; Laser induced fluorescence
• CPC Class Codes: G01N 21/6458 Fluorescence microscopy fluorescence microscopes per se G02B21/0076 and G02B21/16
• CPC Class Codes: G02B 21/0076 arrangements using fluorescence or luminescence
• CPC Class Codes: G02B 21/04 involving mirrors
• CPC Class Codes: G02B 21/16 adapted for ultraviolet illumination ; Fluorescence microscopes G02B21/0076 takes precedence
• CPC Class Codes: G02B 21/361 Optical details, e.g. image relay to the camera or image sensor G02B21/364 takes precedence; illumination details G02B21/06 and subgroups
• CPC Class Codes: G02B 21/365 Control or image processing arrangements for digital or video microscopes G02B21/361, G02B21/362 take precedence
• CPC Class Codes: G02B 21/367 providing an output produced by processing a plurality of individual source images, e.g. image tiling, montage, composite images, depth sectioning, image comparison
• CPC Class Codes: G02B 27/58 Optics for apodization or superresolution; Optical synthetic aperture systems

Abstract

In a sample, fluorescence emitters are repeatedly excited to emit fluorescence, and still images are produced of the sample by means of a microscope. At least a subset of the fluorescence emitters is isolated in each still image. The positions of the fluorescence emitters are localized in the still images with a location accuracy exceeding the optical resolution. A high-resolution composite image is generated therefrom. An adaptive mirror is arranged in the imaging beam path, and is adjusted in such a manner that it produces an astigmatism when at least one of the still images is produced. As a result, still images with astigmatism are captured. Depth position information for the fluorescence emitters is derived from the rotational asymmetry. The adaptive mirror is additionally adjusted in such a manner that it does not produce any astigmatism when some of the still images are produced.

Claims

1. A method for high-resolution 3D fluorescence microscopy, comprising

(a) repeatedly exciting fluorescence emitters in a sample to emit fluorescence, and producing still images of the sample by means of a microscope having an imaging beam path with an optical resolution and a focal plane, said fluorescence emitters being stimulated to emit fluorescence in such a manner that at least a subset of the fluorescence emitters is isolated in each still image, so that the images of these fluorescence emitters can be separated in the still images within the optical resolution,

(b) localizing the positions of the fluorescence emitters from the images of the isolated fluorescence emitters in the resulting still images, with a location accuracy exceeding the optical resolution, and generating a high-resolution composite image therefrom,

(c) arranging an adaptive mirror in the imaging beam path of the microscope, and adjusting said mirror in such a manner that it produces an astigmatism when at least some of the still images are produced, thereby capturing still images with astigmatism, said images of the fluorescence emitters positioned above the focal plane having a first rotational asymmetry as a result of distortion in a first direction, and the images of fluorescence emitters positioned below the focal plane having a second rotational asymmetry as a result of distortion in a second direction, wherein depth position information for the fluorescence emitters is derived from the rotational asymmetry,

(d) further adjusting said adaptive mirror in such a manner that it does not produce any astigmatism when at least some of the still images are produced, such that non-astigmatic still images are captured, and

(e) detecting rotationally asymmetric images of fluorescence emitters in the non-astigmatic still images, and in the derivation process for the depth position information in the astigmatic still images these fluorescence emitters are either subjected to a depth position correction, or are suppressed.

2. The method according to claim 1, wherein the non-astigmatic still images produced in step (d) are carried out intermittently between step (c), in which astigmatic still images are produced.

3. The method according to claim 2, wherein said adaptive mirror is adjusted in such a manner that it images an astigmatic still image on a first image capture region and a non-astigmatic still image on a second image capture region at the same time.

4. The method according to claim 1, wherein in step (e), the images of the fluorescence emitters in the non-astigmatic still images are used as the starting point for the determination of the rotational asymmetry, for the depth position correction in the derivation of the depth position information.

5. The method according to claim 1, wherein a degree of astigmatism produced by the adaptive mirror is adjusted in order to adjust a depth resolution.

6. A fluorescence microscope for three-dimensional imaging of a sample with a location accuracy exceeding the optical resolution, comprising:

an illumination device designed for repeatedly exciting fluorescence emitters in the sample to emit fluorescence,

an imaging device having an imaging beam path with the optical resolution for producing still images of the sample at the optical resolution,

a control device for controlling the illumination device and the imaging device in such a manner that multiple still images of the sample are produced, said fluorescence emitters being excited to emit fluorescence in such a manner that at least a subset of the fluorescence emitters in each still image is isolated so that the images of these fluorescence emitters can be separated in the still images within the optical resolution

said control device being designed for localizing the positions of the isolated fluorescing fluorescence emitters in the generated still images with a location accuracy exceeding the optical resolution, and of generating a high-resolution composite image therefrom,

the imaging device having an adaptive mirror,

the control device for adjusting the adaptive mirror being designed to produce an astigmatism when at least some of the still images are produced, such that astigmatic still images are thereby captured, wherein the images of fluorescence emitters lying above the focal plane in said still images have a first rotational asymmetry as a result of distortion in a first direction, and the images of fluorescence emitters positioned below the focal plane have a second rotational asymmetry as a result of distortion in a second direction, wherein the control device is designed for the purpose of deriving depth position information for the fluorescence emitters from the rotational asymmetry,

said control device additionally adjusting the adaptive mirror in such a manner that it does not produce any astigmatism when at least some of the still images are produced, such that non-astigmatic still images are captured, and

the control device being designed for detecting rotationally asymmetric images of fluorescence emitters in the non-astigmatic still images, and of subjecting these fluorescence emitters either to a depth position correction, or suppressing the same, in the derivation process for the depth position information in the astigmatic still images.

7. The fluorescence microscope according to claim 6, wherein the control device for adjusting the adaptive mirror is designed in such a manner that non-astigmatic still images are produced intermittently between astigmatic still images.

8. The fluorescence microscope according to claim 6, wherein said imaging device has a first image capture region and a second image capture region, and the control device is designed for the purpose of adjusting the adaptive mirror in such a manner that it images an astigmatic still image on a first image capture region and a non-astigmatic still image on a second image capture region at the same time.

9. The fluorescence microscope according to claim 6, wherein said control device is designed for the purpose of using the images of the fluorescence emitters as the starting point for the determination of the rotational asymmetry, for the depth position correction in the derivation of the depth position information in the astigmatic still images.

10. The fluorescence microscope according to claim 6, wherein said control device is designed for the purpose of adjusting a degree of astigmatism produced by the adaptive mirror in order to adjust a depth resolution.