Integrated device for nucleic acid detection and identification

• US 10,519,492 B2
• Filed: 04/20/2012
• Issued: 12/31/2019
• Est. Priority Date: 04/20/2011
• Status: Active Grant

• Current Assignee: Mesa Biotech, Inc (Thermo Fisher Scientific Incorporated)
• Original Assignee: Mesa Biotech, Inc (Thermo Fisher Scientific Incorporated)
• Inventors: DeJohn, Marc, Cary, Robert B., Cobb, Nathan J.
• Primary Examiner(s): Horlick, Kenneth R
• Application Number:
  US14/113,146
• Publication Number:
  US 20140045191A1
• Time in Patent Office: 2,811 Days
• Field of Search: None
• CPC Class Codes: B01L 3/502723 characterised by venting arrangements
• CPC Class Codes: C12P 19/34 Polynucleotides, e.g. nucleic acids, oligoribonucleotides
• CPC Class Codes: C12Q 1/6844 Nucleic acid amplification reactions
• CPC Class Codes: C12Q 1/686 Polymerase chain reaction [PCR]
• CPC Class Codes: C12Q 2522/101 Single or double stranded nucleic acid binding proteins
• CPC Class Codes: C12Q 2525/204 specific length of the oligonucleotides
• CPC Class Codes: C12Q 2527/107 Temperature of melting, i.e. Tm
• CPC Class Codes: C12Q 2527/125 Specific component of sample, medium or buffer
• CPC Class Codes: C12Q 2527/127 the enzyme inhibitor or activator used

Abstract

A disposable assay platform for detecting a target nucleic acid comprising multiple chambers and a method for operating the assay platform. Solutions containing the target nucleic acid move from one chamber to the next chamber by opening a vent pocket. The resulting pressure change enables the solution to flow to the next chamber. The platform comprises an electronic layer and one or more fluid layers bonded together. All heating operations can be performed by using resistive heating elements in the platform. All cooling operations are preferably passive. The platform is preferably operated when in a vertical orientation and can be docked to an external docking station that controls the operation of the platform.

Claims

1. A disposable platform for detecting a target nucleic acid, the disposable platform comprising:

a sample chamber for receiving a sample comprising the target nucleic acid;

an amplification chamber connected via a first channel to said sample chamber and connected via a first vent channel to a first vent pocket;

a labeling chamber connected via a second channel to said amplification chamber and connected via a second vent channel to a second vent pocket;

a detection subsystem connected to said labeling chamber via a third channel and connected via a third vent channel to a third vent pocket;

a plurality of resistive heating elements; and

one or more temperature measuring devices;

wherein said vent pockets are separate from said sample chamber, said amplification chamber, and said detection subsystem such that said vent channels remain clear of fluid; and

wherein said vent pockets are each sealed from a lower pressure by a heat labile material located in a vicinity of one of said resistive heating elements; and

wherein said platform does not comprise a pumping mechanism for transporting the sample from one of said chambers to another of said chambers or to said detection subsystem.

2. The disposable platform of claim 1 further comprising a sample preparation stage comprising an output in direct fluid connection with an input of said sample chamber.

3. The disposable platform of claim 1 wherein dimensions of a substantially flat surface of said amplification chamber are approximately the same as dimensions of a substantially flat surface of a resistive heating element in thermal contact with said amplification chamber.

4. The disposable platform of claim 1 wherein said amplification chamber is not cooled by an active cooling device.

5. The disposable platform of claim 1 wherein said amplification chamber contains an amplification solution, said sample chamber comprises a liquid amplification reagent mix or a lyophilized amplification reagent mix, and/or said labeling chamber comprises detection particles.

6. The disposable platform of claim 1 wherein said labeling chamber is heatable using one of said resistive heating elements.

7. The disposable platform of claim 1 wherein said detection subsystem comprises a lateral flow strip that does not comprise detection particles.

8. The disposable platform of claim 1 wherein said chambers, said channels, and said vent pockets are located on a fluid assembly layer and electronic elements are located on a separate layer comprising a printed circuit board, said separate layer bonded to said fluid assembly layer.

9. The disposable platform of claim 8 wherein said detection subsystem is located on said fluid assembly layer or on a second fluid assembly layer.

10. The disposable platform of claim 1 wherein a volume of at least one of said chambers is between approximately 1 microliter and approximately 50 microliters.

11. The disposable platform of claim 1 further comprising a connector for docking said disposable platform with a base unit and maintaining the disposable platform in a vertical or tilted orientation.

18. The disposable platform of claim 1 wherein the lower pressure is atmospheric pressure.

12. A method for detecting a target nucleic acid, the method consisting of:

disposing a sample comprising the target nucleic acid in a sample chamber of a disposable platform;

orienting the disposable platform vertically or at a tilt;

reacting the sample with a liquid or previously lyophilized amplification reagent mix;

opening a first vent pocket connected via a first vent channel to an amplification chamber to lower pressure, thereby enabling the reacted sample to flow into the amplification chamber;

amplifying the target nucleic acid in the amplification chamber;

opening a second vent pocket connected via a second vent channel to a labeling chamber to lower pressure, thereby enabling the amplified target nucleic acid to flow into the labeling chamber;

labeling the amplified target nucleic acid using detection particles in the labeling chamber;

opening a third vent pocket connected via a third vent channel to a detection subsystem to lower pressure, thereby enabling the labeled target nucleic acid to flow into the detection subsystem; and

detecting the amplified target nucleic acid;

wherein said vent pockets are separate from said amplification chamber, said labeling chamber, and said detection subsystem such that said vent channels remain clear of fluid; and

wherein each opening step comprises rupturing a heat labile material sealing each vent pocket from lower pressure.

13. The method of claim 12 wherein the amplifying step comprises amplifying the target nucleic acid using a resistive heating element located within the disposable platform in a vicinity of the amplification chamber.

14. The method of claim 12 further comprising passively cooling the amplification chamber.

15. The method of claim 12 further comprising heating the labeling chamber during the labeling step using a resistive heating element located within the disposable platform in a vicinity of the labeling chamber.

16. The method of claim 12 wherein the detection subsystem does not comprise detection particles.

17. The method of claim 12 further comprising controlling operation of the disposable platform by using a docking station which is not an external instrument.

19. The method of claim 12 wherein the lower pressure is atmospheric pressure.