Vectors with modified initiation codon for the translation of AAV-Rep78 useful for production of AAV

• US 10,533,188 B2
• Filed: 11/02/2018
• Issued: 01/14/2020
• Est. Priority Date: 06/21/2006
• Status: Active Grant

• Current Assignee: Uniqure Ip B.V. (uniQure N.V.)
• Original Assignee: Uniqure Ip B.V. (uniQure N.V.)
• Inventors: Hermens, Wilhelmus Theodorus Johannes Maria Christiaan, Haast, Saskia Jacoba Petronella, Biesmans, Dennis Johan, Bakker, Andrew Christian
• Primary Examiner(s): Chestnut, Barry A
• Application Number:
  US16/179,648
• Publication Number:
  US 20190153473A1
• Time in Patent Office: 438 Days
• CPC Class Codes: C07K 14/005 from viruses
• CPC Class Codes: C12N 15/86 Viral vectors
• CPC Class Codes: C12N 2710/14043 viral genome or elements thereof as genetic vectore
• CPC Class Codes: C12N 2710/14044 Chimeric viral vector comprising heterologous viral elements for production of another viral vector
• CPC Class Codes: C12N 2710/14143 viral genome or elements thereof as genetic vector
• CPC Class Codes: C12N 2710/14144 Chimeric viral vector comprising heterologous viral elements for production of another viral vector
• CPC Class Codes: C12N 2710/14152 relating to complementing cells and packaging systems for producing virus or viral particles
• CPC Class Codes: C12N 2750/14121 Viruses as such, e.g. new isolates, mutants or their genomic sequences
• CPC Class Codes: C12N 2750/14122 New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes
• CPC Class Codes: C12N 2750/14143 viral genome or elements thereof as genetic vector
• CPC Class Codes: C12N 2750/14151 Methods of production or purification of viral material
• CPC Class Codes: C12N 2750/14152 relating to complementing cells and packaging systems for producing virus or viral particles
• CPC Class Codes: C12N 2800/105 for insects
• CPC Class Codes: C12N 2800/50 Vectors for producing vectors
• CPC Class Codes: C12N 7/00 Viruses; Bacteriophages; Compositions thereof; Preparation or purification thereof preparing medicinal viral antigen or antibody compositions, e.g. virus vaccines, A61K39/00

Abstract

The present invention relates nucleic acid constructs for the production of recombinant parvoviral (e.g. adeno-associated viral) vectors in insect cells, to insect cells comprising such constructs and to methods wherein the cells are used to produce recombinant parvoviral virions. The insect cells preferably comprise a first nucleotide sequence encoding the parvoviral rep proteins whereby the initiation codon for translation of the parvoviral Rep78 protein is a suboptimal initiation codon that effects partial exon skipping upon expression in insect cells. The insect cell further comprises a second nucleotide sequence comprising at least one parvoviral (AAV) inverted terminal repeat (ITR) nucleotide sequence and a third nucleotide sequence comprising a sequences coding for the parvoviral capsid proteins.

Claims

1. A nucleic acid construct encoding parvoviral Rep protein Rep78 and Rep52, the nucleic acid construct comprising:

(a) a biscistronic nucleic acid encoding a parvovirus Rep78 protein and a parvovirus Rep52 protein, the biscistronic nucleic acid comprising a nucleic acid sequence encoding the Rep78 protein that overlaps with a nucleic acid sequence encoding the Rep52 protein, such that the nucleic acid sequence encoding the parvoviral Rep52 protein is not repeated in the biscistronic nucleic acid;

(b) a first expression control sequence that is active in an insect cell operably linked to the sequence encoding Rep78 protein;

(c) a second expression control sequence that is active in an insect cell operably linked to the sequence encoding Rep52 protein.

2. The nucleic acid construct of claim 1, wherein both the parvoviral Rep78 protein and the parvoviral Rep52 protein are produced when the nucleic acid construct is expressed in the insect cell.

3. The nucleic acid construct of claim 2, wherein the parvoviral Rep78 protein and the parvoviral Rep52 protein are produced in a molar ratio in the range of 1:

10 to 10;

1.

4. The nucleic acid construct of claim 1, wherein the first expression control sequence comprises an initiation codon.

5. The nucleic acid construct of claim 4, wherein the initiation codon is a suboptimal initiation codon.

6. The nucleic acid construct of claim 5, wherein the suboptimal initiation codon is selected from the group consisting of ACG, TTG, CTG, and GTG.

7. The nucleic acid construct of claim 1, wherein the first expression control sequence comprises SEQ ID NO:

7.

8. The nucleic acid construct of claim 1, wherein the first and second expression control sequences comprise a promoter.

9. The nucleic acid construct of claim 8, wherein the promoter is selected from the group consisting of polyhedron promoter, p10 promoter, p35 promoter, IE-1 promoter, and delta-IE1 promoter.

10. The nucleic acid construct of claim 1, wherein the second expression control sequence comprises an internal ribosome entry site (IRES).

11. The nucleic acid construct of claim 1 further comprising a sequence encoding a Cap protein operably linked to an expression control sequence for expressing the Cap protein in an insect cell.

12. The nucleic acid construct of claim 1, wherein the nucleic acid construct comprises a second nucleotide sequence comprising at least one parvoviral inverted terminal repeat (ITR) sequence and a third nucleotide sequence comprising at least one parvoviral Cap protein encoding sequence operably linked to an expression control sequence for expressing the at least one Cap protein in an insect cell.

13. The nucleic acid construct of claim 1, wherein the nucleic acid construct comprises a polyadenylation sequence at its 3′

-end.

14. A recombinant viral vector comprising the nucleic acid construction of claim 1.

15. A baculovirus vector comprising the nucleic acid construction of claim 1.

16. An insect cell comprising the nucleic acid construction of claim 1.

17. The insect cell of claim 16, wherein the insect cell is selected from the group consisting of Se301, Seizd2109, Seucr1, sf9, Sf900+, Sf21, Bti-Tn-5b1-4, Mg-1, Tn368, Hzam1, Ha2302, Hz2e5, High five and Express+.

18. The insect cell of claim 16, wherein the insect cell further comprises a nucleotide sequence comprising at least one parvoviral inverted terminal repeat (ITR) sequence and a nucleotide sequence comprising at least one parvoviral Cap protein encoding sequence operably linked to an expression control sequence for expressing the at least one Cap protein in the insect cell.

19. A method for producing recombinant parvovirus Rep78 and Rep52 proteins in an insect cell, comprising transfecting an insect cell with the nucleic acid construct of claim 1, wherein both Rep78 protein and Rep52 protein are produced in the insect cell.

20. The method of claim 19, wherein the insect cell is transfected with a baculovirus vector comprising the nucleic acid construct.