Group sparsity model for image unmixing
First Claim
1. A system configured to analyze tissue obtained from a biological specimen, said system comprising:
- a color data storage module to store, for each of a plurality of markers, color data indicative of a color of tissue marked by the respective marker;
a co-location data storage module to store co-location data defining a plurality of groups of said markers, each group consisting of markers having an affinity to a respective common tissue feature, wherein a tissue feature is a characteristic of a tissue that is indicative of a medical condition;
a tissue image data storage module to store a plurality of pixels representative of a tissue image, each pixel comprising color information; and
a tissue image analysis module to unmix said tissue image, wherein said tissue image analysis module is configured to read said color data from said color data storage module, said co-location data from said co-location data storage module and said pixels from said tissue image data storage module, and to calculate, for each of said pixels and for each of said groups, a linear combination of the colors of the markers of the respective group that yields a minimum difference between said color information of the respective pixel and said linear combination of colors, and wherein, for each of said pixels, said tissue image analysis module is to determine a group for which said minimum difference is smallest and outputs said tissue feature of said group as an analysis result.
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Accused Products
Abstract
Systems and methods described herein relate, among other things, to unmixing more than three stains, while preserving the biological constraints of the biomarkers. Unlimited numbers of markers may be unmixed from a limited-channel image, such as an RGB image, without adding any mathematical complicity to the model. Known co-localization information of different biomarkers within the same tissue section enables defining fixed upper bounds for the number of stains at one pixel. A group sparsity model may be leveraged to explicitly model the fractions of stain contributions from the co-localized biomarkers into one group to yield a least squares solution within the group. A sparse solution may be obtained among the groups to ensure that only a small number of groups with a total number of stains being less than the upper bound are activated.
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Citations
10 Claims
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1. A system configured to analyze tissue obtained from a biological specimen, said system comprising:
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a color data storage module to store, for each of a plurality of markers, color data indicative of a color of tissue marked by the respective marker; a co-location data storage module to store co-location data defining a plurality of groups of said markers, each group consisting of markers having an affinity to a respective common tissue feature, wherein a tissue feature is a characteristic of a tissue that is indicative of a medical condition; a tissue image data storage module to store a plurality of pixels representative of a tissue image, each pixel comprising color information; and a tissue image analysis module to unmix said tissue image, wherein said tissue image analysis module is configured to read said color data from said color data storage module, said co-location data from said co-location data storage module and said pixels from said tissue image data storage module, and to calculate, for each of said pixels and for each of said groups, a linear combination of the colors of the markers of the respective group that yields a minimum difference between said color information of the respective pixel and said linear combination of colors, and wherein, for each of said pixels, said tissue image analysis module is to determine a group for which said minimum difference is smallest and outputs said tissue feature of said group as an analysis result. - View Dependent Claims (2, 3, 4, 5)
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6. A method of analyzing tissue obtained from a biological specimen, comprising:
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storing, for each of a plurality of markers, color data indicative of a color of tissue marked by the respective marker; storing co-location data defining a plurality of groups of said markers, each group consisting of markers having an affinity to a respective common tissue feature, wherein a tissue feature is a characteristic of a tissue that is indicative of a medical condition; storing a plurality of pixels representative of a tissue image, each pixel comprising color information; unmixing said tissue image using said color data, said co-location data and said pixels by calculating, for each of said pixels and for each of said groups, a linear combination of the colors of the markers of the respective group that yields a minimum difference between said color information of the respective pixel and said linear combination of colors; determining, for each of said pixels, a group for which said minimum difference is smallest; and outputting said tissue feature of said group as an analysis result. - View Dependent Claims (7, 8, 9, 10)
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Specification