Selectively altering microbiota for immune modulation
First Claim
1. A method of treating or reducing the symptoms of a lung disease or lung condition associated with pathogenic host cells in a human or animal subject, the method comprising selective targeting of the pathogenic host cells, wherein the host cells are Escherichia coli, Actinobacillus, Diplococcus, Staphylococcus, Streptococcus, Mycobacterium, Chlamydia, Klebsiella, Legionella, Haemophilus, Ruminococcus, Veillonella, Acinetobacter, Prevotella, Yersinia, Achromobacter, Burkholderia, Bordetella, Carnobacterium, Alloiococcus, Enterococcus, Bavariicoccus, Vagococcus, or Pseudomonas cells, wherein the host cells are comprised by a microbiota in the subject, wherein the method comprising:
- a. contacting the microbiota with an engineered nucleic acid sequence for producing a host modifying (HM) crRNA, andb. producing the HM-crRNA in a host cell, wherein the HM-crRNA is operable with a Cas nuclease in the host cell to form a HM-CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)/Cas system, and wherein the HM-crRNA comprises a sequence that is capable of hybridizing to a target sequence of the host cell to guide the Cas nuclease to the target sequence in the host cell, whereby the target sequence is modified by the HM/CRISPR/Cas system and the host cell is killed or growth of the host cell is reduced, thereby reducing the proportion of host cells in the microbiota; and
wherein the microbiota is a lung microbiota.
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Abstract
The invention relates to methods of modulating immune cells in a patient by altering microbiota of the patient. The invention also relates to methods of modulating treatments or therapies in a subject organism by altering microbiota of the subject. The invention also relates to cell populations, systems, arrays, cells, RNA, kits and other means for effecting this. In an example, advantageously selective targeting of a particular species in a human gut microbiota using guided nucleic acid modification is carried out to effect the alteration.
124 Citations
22 Claims
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1. A method of treating or reducing the symptoms of a lung disease or lung condition associated with pathogenic host cells in a human or animal subject, the method comprising selective targeting of the pathogenic host cells, wherein the host cells are Escherichia coli, Actinobacillus, Diplococcus, Staphylococcus, Streptococcus, Mycobacterium, Chlamydia, Klebsiella, Legionella, Haemophilus, Ruminococcus, Veillonella, Acinetobacter, Prevotella, Yersinia, Achromobacter, Burkholderia, Bordetella, Carnobacterium, Alloiococcus, Enterococcus, Bavariicoccus, Vagococcus, or Pseudomonas cells, wherein the host cells are comprised by a microbiota in the subject, wherein the method comprising:
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a. contacting the microbiota with an engineered nucleic acid sequence for producing a host modifying (HM) crRNA, and b. producing the HM-crRNA in a host cell, wherein the HM-crRNA is operable with a Cas nuclease in the host cell to form a HM-CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)/Cas system, and wherein the HM-crRNA comprises a sequence that is capable of hybridizing to a target sequence of the host cell to guide the Cas nuclease to the target sequence in the host cell, whereby the target sequence is modified by the HM/CRISPR/Cas system and the host cell is killed or growth of the host cell is reduced, thereby reducing the proportion of host cells in the microbiota; and wherein the microbiota is a lung microbiota. - View Dependent Claims (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22)
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Specification