Compositions and methods for controlling Leptinotarsa

• US 10,597,676 B2
• Filed: 11/21/2017
• Issued: 03/24/2020
• Est. Priority Date: 07/19/2013
• Status: Active Grant

• Current Assignee: Monsanto Technology LLC (Bayer AG)
• Original Assignee: Monsanto Technology LLC (Bayer AG)
• Inventors: Beattie, Jodi Lynn, Crawford, Michael John, Eads, Brian Donovan, Flagel, Lex Evan, Kapoor, Mahak, Taylor, Christina Marie
• Primary Examiner(s): Ibrahim, Medina A
• Assistant Examiner(s): Zhong, Wayne
• Application Number:
  US15/819,840
• Publication Number:
  US 20180066278A1
• Time in Patent Office: 854 Days
• Field of Search: None
• CPC Class Codes: C07K 14/43563 from insects
• CPC Class Codes: C12N 15/113 Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing when used in plants C12N15/8218
• CPC Class Codes: C12N 15/8218 Antisense, co-suppression, viral induced gene silencing [VIGS], post-transcriptional induced gene silencing [PTGS]
• CPC Class Codes: C12N 15/8286 for insect resistance
• CPC Class Codes: C12N 2310/14 interfering N.A.
• CPC Class Codes: Y02A 40/146 Genetically Modified [GMO] plants, e.g. transgenic plants

Abstract

Disclosed herein are methods of controlling insect pests, in particular Leptinotarsa spp. which infest crop plants, and methods of providing plants resistant to such pests. Also disclosed are polynucleotides and recombinant DNA molecules and constructs useful in such methods, insecticidal compositions such as topical sprays containing insecticidal double-stranded RNAs, and solanaceous plants with improved resistance to infestation by Leptinotarsa spp. Further disclosed are methods of selecting target genes for RNAi-mediated silencing and control of Leptinotarsa spp.

Claims

1. A method for controlling a Leptinotarsa species infestation of a plant comprising:

(a) contacting said Leptinotarsa species with an inhibitory polynucleotide comprising a nucleotide sequence that is complementary to at least 21 contiguous nucleotides of SEQ ID NO;

730, or an RNA transcribed therefrom;

or

(b) providing in the diet of said Leptinotarsa species an inhibitory polynucleotide comprising a nucleotide sequence that is complementary to at least 21 contiguous nucleotides of SEQ ID NO;

730, or an RNA transcribed therefrom;

or

(c) causing mortality or stunting in larvae of said Leptinotarsa species by providing in the diet of said larvae at least one inhibitory polynucleotide comprising at least one silencing element comprising 21 contiguous nucleotides that are complementary to SEQ ID NO;

730, or an RNA transcribed therefrom;

or

(d) topically applying to said plant a composition comprising at least one polynucleotide comprising an inhibitory nucleotide sequence that is complementary to at least 21 contiguous nucleotides of SEQ ID NO;

730, or an RNA transcribed therefrom;

or

(e) expressing in said plant at least one inhibitory polynucleotide comprising at least one segment that is identical or complementary to at least 21 contiguous nucleotides of SEQ ID NO;

730;

or

(f) providing to said plant at least one inhibitory polynucleotide comprising at least one segment that is identical or complementary to at least 21 contiguous nucleotides of SEQ ID NO;

730 or an RNA transcribed therefrom;

or

(g) contacting said Leptinotarsa species with an inhibitory polynucleotide comprising at least one segment that is identical or complementary to at least 21 contiguous nucleotides of SEQ ID NO;

730, or an RNA transcribed therefrom.

2. The method of claim 1, wherein said inhibitory polynucleotide is a double-stranded RNA.

3. The method of claim 2, wherein said double-stranded RNA is chemically synthesized or is produced by expression in a microorganism or by expression in a plant cell.

4. The method of claim 2, wherein said double-stranded RNA comprises a strand comprising a sequence selected from the group consisting of:

SEQ ID NOs;

989, 1104, 1105, and 1110.

5. The method of claim 1, wherein said method comprises topically applying to said plant a composition comprising at least one inhibitory polynucleotide comprising a nucleotide sequence that is complementary to at least 21 contiguous nucleotides of SEQ ID NO:

730, or an RNA transcribed therefrom; and

wherein said composition further comprises one or more components selected from the group consisting of a carrier agent, a surfactant, a cationic lipid, an organosilicone, an organosilicone surfactant, a polynucleotide herbicidal molecule, a non-polynucleotide herbicidal molecule, a non-polynucleotide pesticide, a safener, and an insect growth regulator.

6. The method of claim 1, wherein said method comprises contacting said Leptinotarsa species with a solution comprising a double-stranded RNA, wherein at least one strand of the double-stranded RNA is complementary to at least 21 contiguous nucleotides of a gene that encodes a ribosomal protein or an RNA transcribed from said gene, wherein said Leptinotarsa species is Leptinotarsa decemlineata, and wherein RNA interference is induced and Leptinotarsa decemlineata mortality occurs, and wherein said ribosomal protein is a ribosomal L7 protein or a protein encoded by SEQ ID NO:

730, or wherein said double-stranded RNA comprises a sequence selected from the group consisting of SEQ ID NO;

989, 988, 1104, 1105, or 1110.

7. The method of claim 6, wherein said solution further comprises one or more components selected from the group consisting of an organosilicone surfactant or a cationic lipid.

8. The method of claim 1, wherein said method comprises topically applying to said plant a composition comprising at least one inhibitory polynucleotide in a manner such that said inhibitory polynucleotide is ingested by Leptinotarsa species feeding on said plant, said inhibitory polynucleotide comprising a nucleotide sequence that is complementary to at least 21 contiguous nucleotides of SEQ ID NO:

730, or an RNA transcribed therefrom;

wherein said Leptinotarsa species is Leptinotarsa decemlineata; and

wherein said polynucleotide is a double-stranded RNA having a strand with a sequence selected from the group consisting of SEQ ID NO;

989, 988, 1104, 1105 or 1110.

9. The method of claim 1, wherein said Leptinotarsa species is selected from the group consisting of:

Leptinotarsa behrensi, Leptinotarsa collinsi, Leptinotarsa decemlineata (Colorado potato beetle), Leptinotarsa defecta, Leptinotarsa haldemani (Haldeman'"'"'s green potato beetle), Leptinotarsa heydeni, Leptinotarsa juncta (false potato beetle), Leptinotarsa lineolata (burrobrush leaf beetle), Leptinotarsa peninsularis, Leptinotarsa rubiginosa, Leptinotarsa texana, Leptinotarsa tlascalana, Leptinotarsa tumamoca, and Leptinotarsa typographica.

10. A plant having improved resistance to a Leptinotarsa species infestation, provided by the method of claim 1, or a fruit, seed, or propagatable part of said plant, wherein said fruit, seed, or propagatable part comprises said inhibitory polynucleotide.

11. The plant of claim 10, wherein said plant is selected from the group consisting of potato, tomato, and eggplant.

12. A insecticidal composition for controlling a Leptinotarsa species, comprising:

(a) at least one double-stranded RNA (dsRNA) comprising at least 21 contiguous nucleotides that are complementary to a SEQ ID NO;

730, or an RNA transcribed therefrom, wherein said at least one dsRNA causes mortality or stunting of growth in said Leptinotarsa species when ingested or contacted by said Leptinotarsa species;

or

(b) at least one dsRNA comprising at least one silencing element that is complementary to at least 21 contiguous nucleotides of SEQ ID NO;

730, wherein said at least one dsRNA causes mortality or stunting of growth in said Leptinotarsa species when ingested or contacted by said Leptinotarsa species;

or

(c) at least one dsRNA comprising at least one segment that is identical or complementary to at least 21 contiguous nucleotides of SEQ ID NO;

730, or an RNA transcribed therefrom, wherein said at least one dsRNA causes mortality or stunting of growth in said Leptinotarsa species when ingested or contacted by said Leptinotarsa species;

or

(d) an RNA molecule that causes mortality or stunting of growth in a Leptinotarsa species when ingested or contacted by said Leptinotarsa species, wherein said RNA molecule comprises at least 21 contiguous nucleotides that are complementary to SEQ ID NO;

730, or an RNA transcribed therefrom;

or

(e) an insecticidal dsRNA molecule that causes mortality or stunting of growth in a Leptinotarsa species when ingested or contacted by said Leptinotarsa species, wherein at least one strand of said insecticidal dsRNA molecule comprises 21 contiguous nucleotides that are complementary to SEQ ID NO;

730, or an RNA transcribed therefrom;

or

(f) at least one dsRNA comprising a sequence selected from the group consisting of;

SEQ ID NOs;

989, 988, 1104, 1105, and 1110, wherein said at least one dsRNA causes mortality or stunting of growth in said Leptinotarsa species when ingested or contacted by said Leptinotarsa species.

13. The insecticidal composition of claim 12, wherein said insecticidal composition is in the form of at least one selected from the group consisting of a solid, liquid, powder, suspension, emulsion, spray, encapsulation, microbeads, carrier particulates, film, matrix, seed treatment, soil drench, implantable formulation, and in-furrow formulation.

14. The insecticidal composition of claim 12, further comprising at least one component selected from the group consisting of a carrier agent, a surfactant, a cationic lipid, an organosilicone, an organosilicone surfactant, a polynucleotide herbicidal molecule, a non-polynucleotide herbicidal molecule, a non-polynucleotide pesticide, a safener, and an insect growth regulator.

15. The insecticidal composition of claim 12, wherein said insecticidal composition comprises an insecticidal double-stranded RNA molecule that causes mortality or stunting of growth in a Leptinotarsa species when ingested or contacted by said Leptinotarsa species, wherein said insecticidal double-stranded RNA molecule comprises at least one segment that is complementary to 21 contiguous nucleotides of a DNA having the sequence of SEQ ID NO:

730, or an RNA transcribed from said DNA.

16. A recombinant DNA construct comprising a heterologous promoter operably linked to:

(a) a DNA encoding an inhibitory nucleotide sequence that is complementary to at least 21 contiguous nucleotides of SEQ ID NO;

730, or an RNA transcribed therefrom;

or

(b) a DNA encoding 21 or more contiguous inhibitory nucleotide sequence having 100% identity to a fragment of equivalent length of a DNA having a sequence of SEQ ID NO;

730, or the DNA complement thereof;

or

(c) a DNA encoding at least one silencing element that is complementary to at least 21 contiguous nucleotides of SEQ ID NO;

730, or an RNA transcribed therefrom;

or

(d) a DNA encoding at least one silencing element comprising at least 21 contiguous nucleotides that are complementary to SEQ ID NO;

730, or an RNA transcribed therefrom;

or

(e) a DNA encoding a RNA comprising at least 21 contiguous nucleotides that are complementary to a nucleotide sequence selected from the group consisting of;

SEQ ID NOs;

989, 988, 1104, 1105, and 1110, or the complement thereof;

or

(f) a DNA encoding a RNA comprising at least one double-stranded RNA region, at least one strand of which comprises at least 21 contiguous nucleotides that are complementary to a nucleotide sequence selected from the group consisting of;

SEQ ID NOs;

989, 988, 1104, 1105, and 1110, or the complement thereat;

or

(g) a DNA encoding RNA comprising a nucleotide sequence selected from the group consisting of;

SEQ ID NOs;

989, 988, 1104, 1105, and 1110, or the complement thereof.

17. A recombinant plant virus vector or a recombinant baculovirus vector comprising the recombinant DNA construct of claim 16.

18. A transgenic solanaceous plant cell having in its genome the recombinant DNA construct of claim 16.

19. The transgenic solanaceous plant cell of claim 18, wherein said transgenic solanaceous plant cell further comprises in its genome a DNA encoding at least one pesticidal agent selected from the group consisting of a patatin, a plant lectin, a phytoecdysteroid, a Bacillus thuringiensis insecticidal protein, a Xenorhabdus insecticidal protein, a Photorhabdus insecticidal protein, a Bacillus laterosporous insecticidal protein, and a Bacillus sphaericus insecticidal protein.

20. A transgenic solanaceous plant comprising the transgenic solanaceous plant cell of claim 18, or a fruit, seed, or propagatable part of said transgenic solanaceous plant, wherein said fruit, seed, or propagatable part comprises said recombinant DNA construct.