Free-solution response function interferometry

• US 10,627,396 B2
• Filed: 01/27/2017
• Issued: 04/21/2020
• Est. Priority Date: 01/29/2016
• Status: Active Grant

• Current Assignee: Vanderbilt University
• Original Assignee: Vanderbilt University
• Inventors: Bornhop, Darryl J., Kussrow, Amanda, Kammer, Michael
• Primary Examiner(s): Hansen, Jonathan M
• Application Number:
  US16/073,630
• Publication Number:
  US 20190033301A1
• Time in Patent Office: 1,180 Days
• CPC Class Codes: G01N 21/19 Dichroism
• CPC Class Codes: G01N 21/41 Refractivity; Phase-affecting properties, e.g. optical path length G01N21/21 takes precedence
• CPC Class Codes: G01N 21/4133 Refractometers, e.g. differential
• CPC Class Codes: G01N 21/45 using interferometric methods; using Schlieren methods
• CPC Class Codes: G01N 2201/0221 Portable; cableless; compact; hand-held
• CPC Class Codes: G01N 33/536 with immune complex formed in liquid phase

Abstract

Disclosed are methods for the free solution measurement of molecular interactions by refractive index sensing other than backscattering interferometry. The disclosed methods can have very low detection limits and/or very low sample volume requirements. Also disclosed are various biosensor applications of the disclosed techniques. This abstract is intended as a scanning tool for purposes of searching in the particular art and is not intended to be limiting of the present invention.

Claims

1. A free-solution analytical method comprising detecting molecular interactions between a first non-immobilized analyte and a second non-immobilized analyte, wherein the detection is performed by refractive index sensing other than backscattering interferometry, or by circular dichroism, wherein at least one of the analytes is present in an amount of less than about 1.0×

10<sup>−

6</sup> M.

2. The method of claim 1, wherein the detection is performed by refractive index sensing other than forward scattering or side scattering interferometry.

3. The method of claim 1, wherein both analytes are unlabeled.

4. The method of claim 1, wherein each of the analytes is present in an amount of less than about 1.0×

10<sup>−

6</sup> M.

5. The method of claim 1, wherein detecting comprises one or more of:

(a) determining an equilibrium constant, a dissociation constant, a dissociation rate, or an association rate;

(b) calculating a change in hydrodynamic volume, entropy, or enthalpy;

(c) determining the concentration of the first and/or second analyte;

(d) identifying the presence of the first and/or second analyte; and

(e) identifying the presence of a third analyte.

6. The method of claim 1, wherein refractive index sensing is via a hand-held refractive index sensing device.

7. The method of claim 1, wherein refractive index sensing is via a RI detectors based on the angle of deviation method of measurement, a RI detectors based on the Fresnel method of RI measurement, a Christiansen effect detector, an interferometer detector, or a differential refractometer detector.

21. The method of claim 1, wherein at least one of the analytes is present in an amount of less than about 1.0×

10<sup>−

9</sup> M.

22. The method of claim 1, wherein each of the analytes is present in an amount of less than about 1.0×

10<sup>−

9</sup> M.

8. A free-solution analytical method comprising the steps of:

(a) providing a refractive index sensor for reception of a fluid sample to be analyzed;

(b) introducing a first sample comprising a first non-immobilized analyte to be analyzed and a second sample comprising a second non-immobilized analyte to be analyzed onto the sensor, wherein the first analyte is allowed to interact with the second analyte;

(c) interrogating the fluid sample with light;

(d) detecting the light after interaction with the fluid sample, wherein the detected light is not backscattered; and

(e) detecting a molecular interaction between the first and second analyte wherein at least one of the analytes is present in an amount of less than about 1.0×

10<sup>−

6</sup> M.

9. The method of claim 8, wherein the sample is positioned inside a channel formed in a substrate, the channel has a longitudinal direction and a transverse direction, and the light is elongated in the longitudinal direction of the channel.

10. The method of claim 9, wherein the light is incident on at least a portion of the channel greater than 4 mm in length along the longitudinal direction.

11. The method of claim 8, wherein the light is not scattered.

12. The method of claim 8, wherein the first and/or second analyte is a complex.

13. The method of claim 8, wherein the molecular interaction is the formation of one or more covalent bonds, electrostatic bonds, hydrogen bonds, or hydrophobic interactions.

14. The method of claim 8, wherein the first and/or second analyte is one or more of an antibody, an antigen, a protein, a small molecule, a drug, a receptor, a cell, an oligonucleotide, a carbohydrate, an enzyme, a substrate, a DNA, an aptamer, a RNA, a nucleic acid, a biomolecule, a molecular imprint, a protein mimetic, an antibody derivative, a lectin, a cell membrane, an ion, a virus particle, a bacteria, and a micro-RNA.

15. The method of claim 8, wherein the molecular interaction is a binding event between one or more of antibody-antigen, protein-protein, small molecule-small molecule, small molecule-protein, drug-receptor, antibody-cell, virus-cell, virus-protein, bacteria-cell, bacteria-protein, virus-DNA, virus-RNA, bacteria-DNA, bacteria-RNA, protein-cell, oligonucleotide-cell, carbohydrate-cell, cell-cell, enzyme-substrate, protein-DNA, protein-aptamer, DNA-DNA, RNA-DNA, DNA-RNA, protein-RNA, small molecule-nucleic acid, biomolecule-molecular imprint, biomolecule-protein mimetic, biomolecule-antibody derivatives, lectin-carbohydrate, biomolecule-carbohydrate, small molecule-cell membrane, ion-protein, and protein-protein.

16. The method of claim 8, wherein the molecular interaction lacks a change in mass.

17. The method of claim 8, wherein the first and second sample are introduced simultaneously.

18. The method of claim 8, wherein the first and second sample are introduced sequentially.

23. The method of claim 8, wherein each of the analytes is present in an amount of less than about 1.0×

10<sup>−

6</sup> M.

24. The method of claim 8, wherein at least one of the analytes is present in an amount of less than about 1.0×

10<sup>−

9</sup> M.

25. The method of claim 8, wherein each of the analytes is present in an amount of less than about 1.0×

10<sup>−

9</sup> M.

19. A free-solution analytical method comprising detecting a molecular change in an analyte, wherein the detection is performed by refractive index sensing other than backscattering interferometry, wherein detecting a molecular change comprises determining the degree of polymerization, protein folding, protein aggregation, blood oxygenation, the conformational state of an ion channel or membrane protein, or the hydration state of an ion channel or membrane protein, and wherein the analyte is present in an amount of less than about 1.0×

10<sup>−

6</sup>.

20. The method of claim 19, wherein the detection is performed by refractive index sensing other than forward scattering or side scattering interferometry.

26. The method of claim 19, wherein the analyte is present in an amount of less than about 1.0×

10<sup>−

9</sup> M.