Data analysis

• US 20020059151A1
• Filed: 05/03/2001
• Published: 05/16/2002
• Est. Priority Date: 11/06/1998
• Status: Abandoned Application

• Current Assignee: Manchester Metropolitan University
• Original Assignee: Manchester Metropolitan University
• Inventors: Soufian, Majeed, Claydon, Martin Arthur
• Application Number:
  US09/847,589
• Publication Number:
  US 20020059151A1
• Time in Patent Office: Days
• US Class Current: 706/15
• CPC Class Codes: H01J 49/0036 Step by step routines describing the handling of the data generated during a measurement

Abstract

The invention relates to a method of comparing data which method comprises defining a plurality of data points in respect of each item to be compared across the complete range of data, converting each data point to a vector spatial function, said function being characteristic of the position/shape and/or relative intensity of the data at that point, assembling the vector spatial functions for the data range in question as a cluster and then determining the kernel function in respect of said cluster, determining a radial basis function for each kernel which is characteristic of all the information in that spectrum and comparing the radial base function of the cluster kernel of the sample item with the radial basis function of the cluster kernel of the other data items within the database.

Claims

1. A method of comparing spectral data or like data, which method comprises defining as a group, a plurality of data points within a range of data points for a data item, converting said group of data points to at least one kernel function, assembling the resultant plurality of kernel functions covering all the data points for the data item into a cluster, and projecting said cluster of kernel functions in high dimensional space using Cover'"'"'s Theorem to define a single searchable reference point for all the data points for said data item, and comparing the said single searchable point for a sample item with the single searchable point for similarly processed comparison items.

2. A method as claimed in claim 1 characterised in that at least one of the groups of data points is converted into a plurality of kernel functions.

3. A method as claimed in claim 2 wherein the single searchable reference point is defined by a vector function.

4. A method as claimed its claim 1 wherein variables in data points within an item define a radial basis function for the said single searchable point which constitute a measure of the spread of said variables for that item about a mean.

5. A method as claimed in claim 1 wherein uncertainty in the comparison of points is resolved using transformations in possibility theory.

6. A method as claimed in claim 1 wherein the data points are selected across a range of data, in which the data is normalized by comparing all the data magnitudes as a proportion of the highest, which is rated at 1.

7. A method as claimed in claim 1 Wherein the data is spectral data.

8. An apparatus for screening of microorganisms characterised by spectroscopic means for producing spectral data of the sample organism database means containing spectral data for a range of microorganisms and comparison means for comparing the spectral data of the sample with that of the database to permit classification/identification of the sample, characterized in that the spectroscopic means comprises means for producing spectral data of the sample organism by MALDI-TOF techniques and in that the database contains MALDI-TOF-MS spectral data, and in that the comparison means is a method as claimed in claim 1.

9. Apparatus as claimed in claim 8 wherein the spectral data in the database is arranged in groups of data according to the genus of each microorganism with sub-divisions corresponding to each strain of microorganism.

10. Apparatus as claimed in claim 8 characterised in that the sample of unidentified microorganism is prepared by a technique selected from the group consisting of (i) taking cells from a culture and applying them to a sample plate comprising a matrix and (ii) by admixing the cells with the matrix prior to subjecting to MALDI-TOF-MS analysis in order to retain the cellular integrity of the sample.

11. Apparatus as claimed in claim 6 characterised by means for bombarding a sample matrix mixture with laser energy to create a gas phase ionic species which is then pulsed into a flight conduit or tube for identification of both positive and/or negative ions.