Method and apparatus for performing amplification of nucleic acids on supports

• US 20020061532A1
• Filed: 10/02/2001
• Published: 05/23/2002
• Est. Priority Date: 02/14/1997
• Status: Abandoned Application

• Current Assignee: Solexa Incorporated (Illumina Incorporated)
• Original Assignee: MOSAID Technologies Inc. (f/k/a Conversant Intellectual Property Management)
• Inventors: Adams, Christopher P., Kron, Stephen J., Boles, Truett C., Muir, Andrew R.
• Application Number:
  US09/969,287
• Publication Number:
  US 20020061532A1
• Time in Patent Office: Days
• US Class Current: 435/6
• CPC Class Codes: C12Q 1/6834 Enzymatic or biochemical coupling of nucleic acids to a solid phase
• CPC Class Codes: C12Q 2533/107 Probe or oligonucleotide ligation
• CPC Class Codes: C12Q 2565/543 characterised by the use of two or more capture oligonucleotide primers in concert, e.g. bridge amplification
• CPC Class Codes: C12Q 2565/628 being a surface plasmon resonance spectrometer

Abstract

This invention features methods, apparatus and kits for performing nucleic acid hybridization and amplification reactions on a support. Such methods and apparatus are useful in diagnostic and therapeutic processes for synthesizing nucleic acid and detecting target nucleic acids in a sample.

Claims

1. A kit for determining the presence or absence of a target nucleic acid sequence in a test sample, wherein said target nucleic acid is amplified on a solid support and the amplification product is optically detected, said kit comprising a solid support having a surface with an oligonucleotide immobilized thereon, wherein the nucleotide sequence of the immobilized oligonucleotide is complementary to a sequence of the target nucleic acid sequence.

2. The kit of claim 1 wherein the solid support is an optical fiber.

3. A test kit for the detection or quantification of a target nucleic acid sequence in a test sample, wherein said target nucleic acid sequence is enzymatically amplified on a solid support and said amplification product is optically detected, said kit comprising:

a) a carrier means adapted to receive one or more container means therein;

b) a first container means containing a solid support with a predetermined nucleic acid primer immobilized thereon;

c) a second container means containing one or more reagents sufficient to detectably label the amplification product;

d) a third container means containing at least one amplification enzyme; and

e) a fourth container means containing one, or more reagents for preparing a test sample.

4. The kit of claim 3, wherein said predetermined nucleic acid primer sequence is selected from the group consisting of bacterial, viral, fungal, or mutagenized sequences.

5. The kit of claim 3, wherein the solid support is an optical fiber.

6. A kit for determining the presence or absence of a target nucleic acid sequence in a test sample, wherein said target nucleic acid is amplified on a solid support and the amplification product is optically detected, said kit comprising a solid support wherein the support surface has been chemically treated to for attachment of one, or more oligonucleotides thereto.

7. The kit of claim 6 further comprising a container means containing one, or more reagents for the attachment of an oligonucleotide to the surface of the support.

8. A test kit for the detection or quantification of a target nucleic acid sequence in a test sample, wherein said target nucleic acid sequence is enzymatically amplified on a solid support and said amplification product is optically detected, said kit comprising:

a) a carrier means adapted to receive one or more container means therein;

b) a first container means containing an optical fiber with a predetermined nucleic acid primer immobilized to said end of said fiber;

c) a second container means containing one or more reagents sufficient to detectably labeled radionucleotides;

d) a third container means containing at least one polymerase enzyme;

e) a fourth container means containing a liquid medium for preparing a test sample.

9. A kit as claimed in claim 8, wherein said kit further comprises a written instruction sheet.

10. A kit as claimed in claim 8, wherein said detectably labeled nucleotides are labeled with agents selected from the group consisting of chemiluminescent, electrochemiluminescent, radioactive, luminescent, and fluorescent agents.

11. An apparatus for detecting the presence or absence of a target polynucleotide sequence in a test sample, comprising:

a) mounting means for a solid support to be contacted with the test sample and means to connect the support to instrumentation; and

b) interconnection means for said solid support, wherein the support is connected to an optical coupling whereby optical radiation may be optionally bidirectionally coupled into the support as to either be transmitted through the support, or optionally received from the support, or optionally both.

12. An apparatus for detecting the presence or absence of a target polynucleotide sequence in a test sample, comprising:

a) mounting means for an optical fiber, or bundle of optical fibers, wherein the distal end is applied to or inserted in a test sample and the proximal end is connected to instrumentation; and

b) interconnection means for said optical fiber, or bundle of optical fibers, wherein the proximal end is connected to an optical coupling whereby optical radiation may be optionally bidirectionally coupled into the proximal end such as to either be transmitted into the fiber or fiber bundle, or optionally received from the fiber or fiber bundle, or optionally both.