Method of sequencing

• US 20020098499A1
• Filed: 10/03/2001
• Published: 07/25/2002
• Est. Priority Date: 11/16/1995
• Status: Abandoned Application

• Current Assignee: Allan Asp, Peder Carstenius
• Original Assignee: Allan Asp, Peder Carstenius
• Inventors: Asp, Allan, Carstenius, Peder
• Application Number:
  US09/970,412
• Publication Number:
  US 20020098499A1
• Time in Patent Office: Days
• US Class Current: 435/6.11
• CPC Class Codes: C12Q 1/6869 Methods for sequencing
• CPC Class Codes: C12Q 2531/113 PCR
• CPC Class Codes: C12Q 2535/101 Sanger sequencing method, i.e. oligonucleotide sequencing using primer elongation and dideoxynucleotides as chain terminators
• CPC Class Codes: C12Q 2563/131 the label being a member of a cognate binding pair, i.e. extends to antibodies, haptens, avidin
• CPC Class Codes: C12Q 2565/518 characterised by the immobilisation of the nucleic acid sample or target

Abstract

A method of analyzing a sequence of a polynucleotide of interest, comprising the steps of: a) incorporating one member of a specific binding pair at the end of each strand of a double stranded polynucleotide of interest, the number being of the same type for both strands, b) immobilizing both strands of the polynucleotide to a solid support provided with the other member of the specific binding pair, c) annealing sequencing primers to the immobilized strands, d) sequencing both strands by the chain termination method. The polynucleotide of interest is preferably amplified before or in connection with step a) and most preferably by polymerase chain reaction extension. The invention also comprises a kit for use in analyzing the sequence of a polynucleotide of interest.

Claims

1. A method of analyzing a sequence of a polynucleotide of interest, comprising the steps of:

a) incorporating one member of a specific binding pair at the end of each strand of a double stranded polynucleotide of interest, the member being of the same type for both strands,

b) immobilizing both strands of the polynucleotide to a solid support provided with the other member of the specific binding pair,

c) annealing sequencing primers to the immobilized strands,

d) sequencing both strands by the chain termination method.

2. A method according to claim 1, characterized in that the polynucleotide of interest is amplified before or in connection with step a).

3. A method according to claim 2, characterized in that said polynucleotide is amplified by polymerase chain reaction extension of a first and second amplification primer, one primer being annealed to each strand of the double stranded polynucleotide, wherein both primers comprise the member of the specific binding pair, the member being of the same type for both primers, thereby producing copies of both strands of the polynucleotide bonded to said member of the specific binding pair.

4. A method according to any of the claims 1-3, characterized in that the immobilization in step b) is made under denaturating conditions.

5. A method according to any of the claims 1-3, characterized in that the strands are denatured after immobilization in step b).

6. A method according to claim 1, characterized in that the sequencing primers are differently labelled.

7. A method according to claim 6, characterized in that the labels are different fluorescent dyes.

8. A method according to claim 1, characterized in that the solid support is a manifold having a plurality of individual solid phase members.

9. A method according to claim 8, characterized in that the solid phase members are adapted for cooperation with a corresponding set of receptacles.

10. A metod according to claim 1, characterized in that the specific binding pair is selected from biotin—

avidin, biotin—

streptavidin, cystein—

thiol groups, antigen—

antibody, lectin—

sugar.

13. The method according to any of claims 1-10 for confirmatory sequencing e.g. DNA diagnosis, in forensic analysis, HLA typing.

11. A kit for use in analyzing the sequence of a polynucleotide of interest comprising:

(a) a solid support,

(b) amplification primers comprising one member of a specific binding pair, the member being of the same type for both primers,

(c) sequencing primers.

12. A kit according to claim 11, characterized in that the solid support is a manifold having a plurality of individual solid phase members and that the sequencing primers are differently labelled.