Structure and method for performing a determination of an item of interest in a sample

• US 20020127727A1
• Filed: 03/07/2002
• Published: 09/12/2002
• Est. Priority Date: 10/14/1998
• Status: Abandoned Application

• Current Assignee: Charles M. Galitz, Curtis J. Pepe, Daniel Bay, Daniel G. Dahlke, Folim Halaka, Gary Zuck, John M. Clemens, Julius Toth, Mark C. Bach, Mark Pierce, Michael K. Carter, Robert C. Gray, Ronald E. Kukla, Scott G. Safar, Steve Herchenbach
• Original Assignee: Charles M. Galitz, Curtis J. Pepe, Daniel Bay, Daniel G. Dahlke, Folim Halaka, Gary Zuck, John M. Clemens, Julius Toth, Mark C. Bach, Mark Pierce, Michael K. Carter, Robert C. Gray, Ronald E. Kukla, Scott G. Safar, Steve Herchenbach
• Inventors: Pierce, Mark, Toth, Julius, Safar, Scott G., Halaka, Folim, Carter, Michael K., Dahlke, Daniel G., Zuck, Gary, Pepe, Curtis J., Herchenbach, Steve, Bay, Daniel, Clemens, John M., Galitz, Charles M., Bach, Mark C., Gray, Robert C., Kukla, Ronald E.
• Application Number:
  US10/092,837
• Publication Number:
  US 20020127727A1
• Time in Patent Office: Days
• US Class Current: 436/48
• CPC Class Codes: B01L 7/52 with provision for submitting samples to a predetermined sequence of different temperatures, e.g. for treating nucleic acid samples amplification or hybridisation processes per se C12Q1/68; controlling sequential reactions for synthesis B01J19/0046
• CPC Class Codes: G01N 2035/00366 Several different temperatures used
• CPC Class Codes: G01N 35/02 using a plurality of sample containers moved by a conveyor system past one or more treatment or analysis stations G01N35/0098 and G01N35/0099 take precedence
• CPC Class Codes: Y10T 436/11 Automated chemical analysis
• CPC Class Codes: Y10T 436/113332 with conveyance of sample along a test line in a container or rack
• CPC Class Codes: Y10T 436/114165 with step of insertion or removal from test line
• CPC Class Codes: Y10T 436/114998 with treatment or replacement of aspirator element [e.g., cleaning, etc.]

Abstract

A method of performing a determination of an item of interest in a sample using a single structure is disclosed. A sample is provided accessible to the single structure. A first container for processing the sample is placed in a first process path on the single structure. The sample is transferred to the first container in the first process path. A reagent is added to the first container in the first process path. Contents of the first container is mixed in the first process path. The item of interest in the sample is separated from the contents of the first container in the first process path. The separated item of interest in the sample is transferred from the first container in the first process path to a second container in a second process path on the single structure. Contents of the second container is brought to a first temperature different from a temperature of the first process path in the second process path. The item of interest in the second container is detected in the second process path.

Claims

1. A method of performing a determination of an item of interest in a sample using a single structure, the method comprising the steps of:

(a) providing a sample accessible to the single structure;

(b) placing a first container for processing the sample in a first process path on the single structure;

(c) transferring the sample to the first container in the first process path;

(d) adding a reagent to the first container in the first process path;

(e) mixing contents of the first container in the first process path;

(f) separating the item of interest in the sample from the contents of the first container in the first process path;

(g) transferring the separated item of interest in the sample from the first container in the first process path to a second container in a second process path on the single structure;

(h) bringing contents of the second container to a first temperature different from a temperature of the first process path in the second process path; and

(i) detecting the item of interest in the second container in the second process path.

2. A method as defined in claim 1 further comprising the step of:

(j) transferring a second sample to a second first container in the first process path;

(k) adding a reagent to the second first container in the first process path; and

(l) detecting the item of interest in the second first container in the first process path.

3. A method as defined in claim 1 further comprising the step of:

(j) sealing at least one of the first container and the second container.

4. A method as defined in claim 3 further comprising the step of:

(k) removing a seal from at least one of the first container and the second container.

5. A method as defined in claim 1 further comprising the step of:

(j) reducing exposure of contents of at least one of the first container and the second container to a contaminant.

6. A method as defined in claim 1 further comprising the step of:

(j) bringing contents of the second container to a second temperature different from the first temperature in the second process path.

7. A method as defined in claim 1 further comprising the steps of:

(j) transferring a second sample to a second first container in the first process path;

(k) adding a reagent to the second first container in the first process path;

(l) transferring contents of the second first container to an optical flow cell on the single structure;

(m) illuminating the optical flow cell; and

(n) detecting the item of interest in the sample in the optical flow cell.

8. A method as defined in claim 1 wherein the second process path includes a plurality of second process sub-paths, and wherein the transferring step (g) further comprises:

(i) transferring the second container to at least one of the plurality of second process sub-paths.

9. A method as defined in claim 1 wherein a determination of an item of interest comprises at least one process, the method further comprising the steps of:

(j) discerning determinations to be performed by the single structure;

(k) sorting samples provided to the single structure by common at least one process; and

(l) transferring the samples to the first process path in an order determined by sorting step (k).

10. A method as defined in claim 9 further comprising the step of:

(m) allocating an element of the single structure to a given determination based on sorting step (k).

11. A method as defined in claim 9 further comprising the step of:

(m) duplicating an element of the single structure based on sorting step (k).

13. A method as defined in claim 12 further comprising the step of:

(f) sealing at least one of the first container and the second container.

14. A method as defined in claim 13 further comprising the step of:

(g) removing a seal from at least one of the first container and the second container.

15. A method as defined in claim 12 further comprising the step of:

(f) reducing exposure of contents of at least one of the first container and the second container to a contaminant.

16. A method as defined in claim 12 further comprising the step of:

(f) bringing contents of the second container to a second temperature different from the first temperature in the second process path.

17. A method as defined in claim 12 further comprising the steps of:

(f) transferring a second sample to a second first container in the first process path;

(g) adding a reagent to the second first container in the first process path;

(h) transferring contents of the second first container to an optical flow cell on the single structure;

(i) illuminating the optical flow cell; and

(j) detecting the item of interest in the sample in the optical flow cell.

18. A method as defined in claim 12 wherein the second process path includes a plurality of second process sub-paths, and wherein the transferring step (c) further comprises:

(i) transferring the second container to at least one of the plurality of second process sub-paths.

20. A method as defined in claim 19 further comprising the step of:

(f) reducing exposure of contents of the container to a contaminant.

21. A method as defined in claim 19 wherein the process path includes a plurality of sub-paths, and further comprising the step of:

(f) transferring the container to at least one of the plurality of sub-paths.

22. A method as defined in claim 19 wherein a determination of an item of interest comprises at least one process, the method further comprising the steps of:

(f) discerning determinations to be performed by the single structure;

(g) sorting samples provided to the single structure by common at least one process; and

(h) transferring the samples to the first process path in an order determined by sorting step (g).

23. A method as defined in claim 22 further comprising the step of:

(i) allocating an element of the single structure to a given determination based on sorting step (g).

24. A method as defined in claim 22 further comprising the step of:

(i) duplicating an element of the single structure based on sorting step (g).

12. A method of performing a determination of an item of interest in a sample using a single structure, the method comprising the steps of:

(a) transferring a sample to a first container in a first process path on the single structure;

(b) separating an item of interest in the sample from the contents of the first container in the first process path;

(c) transferring the separated item of interest in the sample from the first container in the first process path to a second container in a second process path on the single structure;

(d) bringing contents of the second container to a first temperature different from a temperature of the first process path in the second process path; and

(e) detecting the item of interest in the second container in the second process path.

19. A method of performing a determination of an item of interest in a sample using a single structure, the method comprising the steps of:

(a) transferring a sample to a container in a process path on the single structure;

(b) separating an item of interest in the sample from the contents of the container in the process path;

(c) bringing contents of the container to a first temperature in the process path;

(d) bringing contents of the container to a second temperature different from the first temperature in the process path; and

(e) detecting the item of interest in the container in the process path.

25. A method of performing a determination of an item of interest in a sample using a single structure, the method comprising the steps of:

(a) transferring a sample to a first container in a first process path on the single structure;

(b) transferring the sample from the first container in the first process path to a second container in a second process path on the single structure;

(c) bringing contents of the second container to a first temperature different from a temperature of the first process path in the second process path; and

(d) detecting the item of interest in the second container in the second process path.

26. A method of performing a determination of an item of interest in a sample using a single structure, the method comprising the steps of:

(a) transferring a sample to a container in a process path on the single structure;

(b) bringing contents of the container to a first temperature on the process path on the single structure;

(c) bringing contents of the container to a second temperature different from the first temperature in the process path on the single structure; and

(d) detecting the item of interest in the container in the process path on the single structure.