Tissue remodeling
First Claim
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1. A method for the modulation of tissue-remodeling, the method comprising:
- contacting the tissue to be remodeled with an effective amount of a compound comprising a sequence selected from;
(a) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 249 to 279 of TGFβ
I receptor (HJ loop);
(b) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 119 to 139 of TGFβ
I receptor (α
D region);
(c) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 104 to 115 of TGFβ
I receptor (B4-B5 region);
(d) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 89 to 103 of TGFβ
I (A-region);
(e) a variant of a sequence according to any one of (a) to (d) wherein up to 40% of the amino acid of the native sequence have been replaced with a naturally or non-naturally occurring amino acid or with a peptidomimetic organic moiety; and
/or up to 40% of the amino acids have their side chains chemically modified and/or up to 20% of the amino acids have been deleted;
provided that at least 50% of the amino acids in the parent sequence of (a) to (d) are maintained unaltered in the variant, and provided that the variant maintains the biological activity of the parent sequences of (a) to (d);
(f) a sequence of any one of (a) to (e) wherein at least one of the amino acids is replaced by the corresponding D-amino acid;
(g) a sequence of any one of (a) to (f) wherein at least one of the peptidic backbones has been altered to a non-naturally occurring peptidic backbone;
(h) a sequence being the sequence of any one of (a) to (g) in reverse order; and
(i) a combination of two or more of the sequences of (a) to (h).
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Abstract
The invention concerns a method for the modulation of tissue-remodeling processes, by contacting the tissue to be remodeled with a compound comprising a sequence derived from certain regions of TGF-β super family Ser/Thr/kinase receptors.
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Citations
66 Claims
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1. A method for the modulation of tissue-remodeling, the method comprising:
- contacting the tissue to be remodeled with an effective amount of a compound comprising a sequence selected from;
(a) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 249 to 279 of TGFβ
I receptor (HJ loop);
(b) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 119 to 139 of TGFβ
I receptor (α
D region);
(c) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 104 to 115 of TGFβ
I receptor (B4-B5 region);
(d) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 89 to 103 of TGFβ
I (A-region);
(e) a variant of a sequence according to any one of (a) to (d) wherein up to 40% of the amino acid of the native sequence have been replaced with a naturally or non-naturally occurring amino acid or with a peptidomimetic organic moiety; and
/or up to 40% of the amino acids have their side chains chemically modified and/or up to 20% of the amino acids have been deleted;
provided that at least 50% of the amino acids in the parent sequence of (a) to (d) are maintained unaltered in the variant, and provided that the variant maintains the biological activity of the parent sequences of (a) to (d);
(f) a sequence of any one of (a) to (e) wherein at least one of the amino acids is replaced by the corresponding D-amino acid;
(g) a sequence of any one of (a) to (f) wherein at least one of the peptidic backbones has been altered to a non-naturally occurring peptidic backbone;
(h) a sequence being the sequence of any one of (a) to (g) in reverse order; and
(i) a combination of two or more of the sequences of (a) to (h). - View Dependent Claims (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 38, 39, 40, 41, 42, 43, 44, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66)
- contacting the tissue to be remodeled with an effective amount of a compound comprising a sequence selected from;
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12. A method for the modulation of tissue remodeling in a subject comprising:
- administering to the subject in need of such treatment a therapeutically effective amount of a compound comprising a sequence selected from;
(a) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 249 to 279 of TGFβ
I receptor (HJ loop);
(b) a sequence which is a continuous stretch of at least five amino acids present in a native TGFP superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 119 to 139 of TGFβ
I receptor (α
D region);
(c) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 104 to 115 of TGFβ
I receptor (B4-B5 region);
(d) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 89 to 103 of TGFβ
I (A-region);
(e) a variant of a sequence according to any one of (a) to (d) wherein up to 40% of the amino acid of the native sequence have been replaced with a naturally or non-naturally occurring amino acid or with a peptidomimetic organic moiety; and
/or up to 40% of the amino acids have their side chains chemically modified and/or up to 20% of the amino acids have been deleted;
provided that at least 50% of the amino acids in the parent sequence of (a) to (d) are maintained unaltered in the variant, and provided that the variant maintains the biological activity of the parent sequences of (a) to (d);
(f) a sequence of any one of (a) to (e) wherein at least one of the amino acids is replaced by the corresponding D-amino acid;
(g) a sequence of any one of (a) to (f) wherein at least one of the peptidic backbones has been altered to a non-naturally occurring peptidic backbone;
(h) a sequence being the sequence of any one of (a) to (g) in reverse order; and
(i) a combination of two or more of the sequences of (a) to (h).
- administering to the subject in need of such treatment a therapeutically effective amount of a compound comprising a sequence selected from;
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20. A method for the modulation of cell proliferation when the TGFβ
- superfamily Ser/Thr kinase receptor is selected from ALK4 or ALK3.
- View Dependent Claims (21)
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37. A method for obtaining a compound for the modulation of tissue-remodeling the method comprising:
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(I) providing a plurality of candidate compounds comprising a sequence selected from;
(a) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 249 to 279 of TGFβ
I receptor (HJ loop);
(b) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 119 to 139 of TGFβ
I receptor ( ) (α
D region);
(c) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 104 to 115 of TGFβ
I receptor (B4-B5 region);
(d) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 89 to 103 of TGFβ
I (A-region);
(e) a variant of a sequence according to any one of (a) to (d) wherein up to 40% of the amino acid of the native sequence have been replaced with a naturally or non-naturally occurring amino acid or with a peptidomimetic organic moiety; and
/or up to 40% of the amino acids have their side chains chemically modified and/or up to 20% of the amino acids have been deleted;
provided that at least 50% of the amino acids in the parent sequence of (a) to (d) are maintained unaltered in the variant, and provided that the variant maintains the biological activity of the parent sequences of (a) to (d);
(f) a sequence of any one of (a) to (e) wherein at least one of the amino acids is replaced by the corresponding D-amino acid;
(g) a sequence of any one of (a) to (f) wherein at least one of the peptidic backbones has been altered to a non-naturally occurring peptidic backbone;
(g) a sequence being the sequence of any one of (a) to (g) in reverse order; and
(i) a combination of two or more of the sequences of (a) to (h). (II) assaying the candidate compounds obtained in (I) in a test assay for tissue remodeling, and determining the level of tissue-remodeling of each candidate compounds;
(III) selecting those compounds which modulate tissue remodeling as compared to the tissue remodeling in the same test assay in the absence of the candidate compounds, thereby obtaining compounds being capable of modulating tissue remodeling activities.
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45. A method for obtaining compounds for the modulation of tissue remodeling comprising:
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(I) providing a plurality of candidate compounds comprising a sequence selected from;
(a) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 249 to 279 of TGFβ
I receptor (HJ loop);
(b) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 119 to 139 of TGFβ
I receptor (α
D region);
(c) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 104 to 115 of TGFβ
I receptor (B4-B5 region);
(d) a sequence which is a continuous stretch of at least five amino acids present in a native TGFβ
superfamily Ser/Thr kinase receptor, in positions of the receptor corresponding to positions 89 to 103 of TGFβ
I (A-region);
(e) a variant of a sequence according to any one of (a) to (d) wherein up to 40% of the amino acid of the native sequence have been replaced with a naturally or non-naturally occurring amino acid or with a peptidomimetic organic moiety; and
/or up to 40% of the amino acids have their side chains chemically modified; and
/or up to 20% of the amino acids have been deleted, provided that at least 50% of the amino acids in the parent sequence of (a) to (d) are maintained unaltered in the variant, and provided that the variant maintains the biological activity of the parent sequences of (a) to (d);
(f) a sequence of any one of (a) to (e) wherein at least one of the amino acids is replaced by the corresponding D-amino acid;
(g) a sequence of any one of (a) to (f) wherein at least one of the peptidic backbones has been altered to a non-naturally occurring peptidic backbone;
(h) a sequence being the sequence of any one of (a) to (g) in reverse order; and
(i) a combination of two or more of the sequences of (a) to (h). (j) contacting the candidate compounds with a test assay for determining the level of a physiological property mediated through a TGFβ
superfamily Ser/Thr kinase receptor signal transduction;
(i) selecting those compounds which modulate the level of the physiological property in the test assay as compared to the modulation of the level of signal transduction in the same test assay in the absence of the candidate compound;
(II) contacting the compounds selected in (III) with a test assay for determining the level of tissue remodeling;
(III) selecting those compounds which modulate tissue-remodeling as compared to the tissue-remodeling remodeling in the same test assay in the absence of the candidate compounds, thereby obtaining compounds being capable of modulating kinase activity.
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Specification