Hybridization apparatus and method for detecting nucleic acid in sample using the same

• US 20030059823A1
• Filed: 09/18/2002
• Published: 03/27/2003
• Est. Priority Date: 09/21/2001
• Status: Abandoned Application

• Current Assignee: JUKI Corporation, Tadashi Matsunaga
• Original Assignee: JUKI Corporation
• Inventors: Matsunaga, Tadashi, Yoda, Kiyoshi, Nemoto, Etsuo, Maruyama, Kohei, Udagawa, Yuji
• Application Number:
  US10/246,959
• Publication Number:
  US 20030059823A1
• Time in Patent Office: Days
• US Class Current: 435/6
• CPC Class Codes: B01L 2300/1805 Conductive heating, heat from thermostatted solids is conducted to receptacles, e.g. heating plates, blocks
• CPC Class Codes: B01L 7/52 with provision for submitting samples to a predetermined sequence of different temperatures, e.g. for treating nucleic acid samples amplification or hybridisation processes per se C12Q1/68; controlling sequential reactions for synthesis B01J19/0046
• CPC Class Codes: G01N 35/0099 comprising robots or similar manipulators robots per se B25J
• CPC Class Codes: G01N 35/028 having reaction cells in the form of microtitration plates

Abstract

A hybridization apparatus includes at least (A) a reaction station having a reaction vessel holder, a heating-cooling device, and a magnetic force controller, (B) a tip rack/waste solution station having a tip rack and a waste solution reservoir, (C) a washing solution station having a washing solution reservoir and a heating-cooling device, and (D) a head station having an arm unit movable in X-Z directions, the arm unit including a tip setting mechanism having a 1o plurality of tip nozzles for respective tips to be attached to or detached from, and a mechanism for the attached tips to suck and inject treatment solution.

Claims

1. An automatic nucleic acid hybridization apparatus comprising:

(A) a denature station having a reaction vessel holder and a heating-cooling device;

(B) an annealing station having a reaction vessel holder and a heating-cooling device;

(C) a magnetic separation station having a reaction vessel holder and a magnetic force controller;

(D) a tip rack storing station having a tip rack;

(E) a washing solution station having a washing solution reservoir;

(F) a waste solution station having a waste solution reservoir; and

(G) a head station having an arm unit movable in X-Z directions, the arm unit including a tip setting mechanism having a plurality of tip nozzles for respective tips to be attached to or detached from the nozzles, a mechanism for the attached tips to suck and/or inject treatment solution, and a robot-hand mechanism capable of holding and releasing a reaction vessel.

2. The apparatus as claimed in claim 1, wherein the waste solution station (F) is disposed at a lower portion of the tip rack storing station (D).

3. The apparatus as claimed in claim 2, further comprising:

(H) a reagent station having a reagent reservoir.

4. A method for detecting a nucleic acid in a sample using the hybridization apparatus as claimed in claim 3, the method automatically executing the following steps(1)-(10) and further (11)-(15) if necessary, and thereafter measuring the amount of labeled nucleic acid in the reaction vessel:

(1) setting on the denature station a reaction vessel in which a nucleic acid probe immobilized on magnetic particles, a labeled probe and a sample nucleic acid, or a nucleic acid probe immobilized on magnetic particles and a labeled sample nucleic acid are injected and mixed, setting the temperature inside the vessel to a denaturing temperature of the nucleic acid by the heating-cooling device, and making the sample nucleic acid single-stranded with the temperature kept for a certain period of time;

(2) transporting the reaction vessel on the denature station to the annealing station with actuation of the arm unit;

(3) annealing the nucleic acid by setting the temperature inside the vessel to an annealing temperature by the heating-cooling device with the temperature kept for a certain period of time;

(4) transporting the reaction vessel from the annealing station to the magnetic separation station by the arm unit;

(5) biasing the nucleic acid bound with the magnetic particles in the vessel with the magnetic force controller energized;

(6) transporting the arm unit to the tip rack storing station, and attaching tips to respective tip nozzles;

(7) transporting the arm unit to the magnetic separation station, and sucking supernatant solution in the reaction vessel by the tip nozzles;

(8) transporting the arm unit to the waste solution station, and discharging the sucked supernatant solution into the waste solution reservoir;

(9) transporting the arm unit to the washing solution station, sucking the washing solution from the washing solution reservoir, and dispensing the washing solution into the reaction vessel on the magnetic separation station;

(10) repeating the washing operation specified insteps (7)-(9) by given times;

(11) after finishing steps (7)-(8), transporting the arm unit to a first reagent station, sucking a marking reagent from a reagent reservoir, dispensing the reagent into the reaction vessel on the magnetic separation station, and leaving still for a certain period of time;

(12) sucking the supernatant solution in the reaction vessel by the tip nozzles, transporting the arm unit to the waste solution station, and discharging the sucked supernatant in the tip nozzles into the waste solution reservoir;

(13) transporting the arm unit to a second washing solution station, sucking washing solution from a second washing solution reservoir, dispensing it into the reaction vessel on the magnetic separation station, and leaving still for a certain period of time;

(14) repeating the washing operation specified in steps

(12)-(13) by given times, and executing step (12); and

(15) transporting the arm unit to a second reagent station, sucking a color developing agent from a reagent reservoir, and dispensing it into the reaction vessel on the magnetic separation station.

5. The method as claimed in claim 4, wherein a reagent unit having previously prepared nucleic acid probe immobilized on magnetic particles is used as the reaction vessel.

6. The method as claimed in claim 4, wherein a reagent unit, having previously prepared nucleic acid probe immobilized on magnetic particles and a luminescence detection probe, is used as the reaction vessel.

7. The method as claimed in claim 4, wherein the magnetic particles are bacterial magnetic particles.

8. The method as claimed in claim 4, wherein the nucleic acid immobilized on the magnetic particles is a single-stranded DNA, RNA, or PNA.

9. The method as claimed in claim 4, wherein the sample nucleic acid is labeled with fluorescent dyes, alkaline phosphatase, or ferrocene.

10. An automatic nucleic acid hybridization apparatus, comprising:

(A′

) a reaction station having a reaction vessel holder, a heating-cooling device, and a magnetic force controller;

(B′

) a tip rack/waste solution station having a tip rack and a waste solution reservoir;

(C′

) a washing solution station having a washing solution reservoir and a heating-cooling device; and

(D′

) a head station having an arm unit movable in X-Z directions, the arm unit comprising a tip setting mechanism having a plurality of tip nozzles for respective tips to be attached to or detached from, and a mechanism for the attached tips to suck and/or inject treatment solution.

11. The apparatus as claimed in claim 10, further comprising (E′

) a reagent station having a reagent reservoir.

12. A method for detecting a nucleic acid in a sample using the hybridization apparatus as claimed in claim 10, the method automatically executing the following steps (1′

)-(8′

), and thereafter measuring the amount of labeled nucleic acid in the reaction vessel;

(1′

) setting on the reaction station a reaction vessel in which a nucleic acid probe immobilized on magnetic particles and a labeled sample nucleic acid are injected and mixed, setting the temperature inside the vessel to a denaturing temperature of the nucleic acid by the heating-cooling device, and making the sample nucleic acid single-stranded with the temperature maintained for a certain period of time;

(2′

) annealing the nucleic acid by changing the temperature inside the vessel to an annealing temperature with the annealing temperature maintained for a certain period of time;

(3′

) biasing in the vessel the nucleic acid bound with the magnetic particles with the magnetic force controller enabled (B/F separation);

(3′

) transporting the arm unit to the tip rack/waste solution station, and attaching tips to respective tip nozzles;

(5′

) transporting the arm unit to the reaction station, and sucking supernatant solution in the reaction vessel by the tip nozzles;

(6′

) transporting the arm unit to the tip rack/waste solution station, and discharging the sucked supernatant solution into the waste solution reservoir;

(7′

) transporting the arm unit to the washing solution station, sucking from the washing solution reservoir the washing solution previously adjusted to the annealing temperature by the heating-cooling device, and dispensing the washing solution into the reaction vessel of the reaction station after immersion of the tip nozzles in the washing solution for a certain period of time; and

(8′

) repeating the washing operation specified at steps (5′

)-(7′

) by given times.

13. The method as claimed in claim 12, wherein the temperature of the washing solution is adjusted either during the term of running the apparatus or at any one of steps (1′

)-(6′

).

14. The method as claimed in claims 13, wherein the tip nozzles maintain the same temperature as the annealing one through the washing solution by immersing the tip nozzles in the washing solution in the washing solution reservoir when the arm unit is in a standby state before the washing steps or during the washing steps.

15. The method as claimed in claim 14, wherein the reaction vessel maintains the inside temperature at 0-15°

C. after finishing step (8′

).

16. The method as claimed in claim 12, wherein, in B/F separation step (step 3′

), the magnetic force is controlled so as to make the magnetic particles collected and immovable at the bottom only of the reaction vessel.

17. The method as claimed in claim 16, wherein the B/F separation and washing steps after finishing hybridization reaction comprise the steps of:

sucking and discharging the supernatant solution with the magnetic force controlled to make the magnetic particles immovable at the bottom only of the reaction vessel; and

injecting into the reaction vessel the washing solution under the immovable state of the magnetic particles, or after making the magnetic particles movable with the control of the magnetic force.

18. The method as claimed in claim 17, wherein the B/F separation and washing steps further comprises moving the magnetic particles in the washing solution with the repetition of turning ON and OFF of the magnetic force.

19. The method as claimed in claim 18, wherein the turning ON and OFF of the magnetic force is implemented by rotating magnets about 180 degrees.