T cell receptor libraries

• US 20030082719A1
• Filed: 07/15/2002
• Published: 05/01/2003
• Est. Priority Date: 01/13/2000
• Status: Abandoned Application

• Current Assignee: Het Nederlands Kanker Instituut
• Original Assignee: Het Nederlands Kanker Instituut
• Inventors: Kessels, Helmut Wilhelmus H. G., Schumacher, Antonius Nicolaas M.
• Application Number:
  US10/196,730
• Publication Number:
  US 20030082719A1
• Time in Patent Office: Days
• US Class Current: 435/69.1
• CPC Class Codes: C07K 14/7051 T-cell receptor (TcR)-CD3 complex
• CPC Class Codes: C07K 2319/00 Fusion polypeptide
• CPC Class Codes: C12N 15/1037 Screening libraries presented on the surface of microorganisms, e.g. phage display, E. coli display
• CPC Class Codes: C12N 2799/027 where the vector is derived from a retrovirus
• CPC Class Codes: C40B 40/02 Libraries contained in or displayed by microorganisms, e.g. bacteria or animal cells; Libraries contained in or displayed by vectors, e.g. plasmids; Libraries containing only microorganisms or vectors

Abstract

Strategies for TCR-display that closely mimic the in vivo situation, meaning at least a stable expression of TCRs to be displayed in mammalian cells exemplified by retroviral insertion of a T cell receptor library into a TCR-negative T cell host. Such mammalian cell line TCR libraries, especially T cell line-displayed TCR libraries would not only allow the selection of desirable TCRs by biochemical means, but also offer the possibility to directly test the functional behavior of selected TCRs. By generating a TCR library that is diversified in its CDR3beta structure, we were able to select novel TCRs that either share specificity with the parental TCR, or that have acquired a specificity for a variant T cell epitope. A change in TCR specificity can thought of as an increase in TCR affinity for the variant epitope.

Claims

1. A method for generating at least one receptor having a desired specificity and/or affinity for a ligand, whereby said receptor undergoes functional processing after ligand-binding, comprising

constructing a sequence encoding such a receptor and

allowing for the product of said sequence to be expressed in a suitable environment wherein said processing after ligand-binding can occur.

2. A method according to claim 1, wherein said at least one receptor is a membrane associated receptor.

3. A method according to claim 1 or 2, wherein said receptor is a T cell receptor.

4. A method according to any one of claims 1-3, wherein said environment is a host cell, in particular a mammalian host cell.

5. A method according to claim 4, wherein said host cell is a T cell receptor negative T cell.

6. A method according to any one of claims 4-5, wherein said constructed sequence is stably associated with the host cell.

7. A method according to any one of claims 1-6, wherein said constructed sequence is a sequence derived from a retrovirus.

8. A method according to any one of claims 1-7, wherein said functional processing comprises clustering of at least two receptors.

9. A method according to anyone of claims 1-8, wherein said functional processing comprises binding to other proteinaceous structures.

10. A method according to anyone of claims 1-9, wherein said receptor'"'"'s affinity is changed through a mutation in said constructed sequence.

11. A method according to claim 10, whereby said receptor'"'"'s affinity is changed to an affinity and/or specificity normally not present in said receptor'"'"'s natural surroundings.

12. A method according to claim 11, wherein said receptor is a T cell receptor having affinity for a self antigen, a tumour antigen and/or a pathogen derived antigen.

13. A method according to anyone of claims 1-12, wherein a number of different constructed sequences are brought into separate suitable environments providing a library of environments having receptors with different ligand-binding affinities.

14. A library of receptors having different ligand binding affinities obtainable by a method according to claim 13.

15. A library according to claim 14, wherein said receptors are T cell receptors.

16. A library according to claim 14 or 15, wherein said suitable environments are host cells.

17. A library according to claim 16, wherein said host cells are T cell receptor negative host cells.

18. A library according to any one of claims 14-17, wherein said constructed sequences comprise sequences derived from a retrovirus.

19. A method for selecting a T cell receptor or a sequence encoding the same, comprising

contacting a ligand to be recognized by said T cell receptor with a library according to any one of claims 14-18 in the appropriate context and

selecting at least one binding T cell receptor from said library.

20. A method according to claim 19, wherein said ligand is presented in the context of an appropriate MHC molecule.

21. A T cell receptor or sequence encoding the same obtainable by a method according to claim 19 or 20.

22. AT cell receptor according to claim 21 having binding affinity for a tumour antigen and/or a self antigen.

23. A method for providing a T cell with the capability of binding a desired presented antigen, comprising providing said T cell with a T cell receptor or a sequence encoding it according to claim 21 or 22.

24. A T cell capable of binding a desired antigen obtainable by a method according to claim 23.

25. A method for providing a subject with additional capability of generating a response against antigens of undesired cells or pathogens, comprising providing said subject with at least one T cell according to claim 24.

26. A method according to claim 25, wherein said T cell is derived from said subject.

27. A method according to claim 25, wherein said subject is matched for an HLA molecule that is utilized by said T cell and/or by a T cell receptor of said T cell.