Polyfunctional support material for complex nucleic acid analysis

• US 20030152961A1
• Filed: 01/30/2003
• Published: 08/14/2003
• Est. Priority Date: 03/22/2000
• Status: Abandoned Application

• Current Assignee: Heike Matuschewski, Peter Bendzko, Timo Hillebrand, Uwe Schedler
• Original Assignee: Heike Matuschewski, Peter Bendzko, Timo Hillebrand, Uwe Schedler
• Inventors: Hillebrand, Timo, Bendzko, Peter, Schedler, Uwe, Matuschewski, Heike
• Application Number:
  US10/239,396
• Publication Number:
  US 20030152961A1
• Time in Patent Office: Days
• US Class Current: 435/6
• CPC Class Codes: B01J 20/3204 Inorganic carriers, supports or substrates
• CPC Class Codes: B01J 20/321 consisting of a polymer obtained by reactions involving only carbon to carbon unsaturated bonds
• CPC Class Codes: B01J 20/3212 consisting of a polymer obtained by reactions otherwise than involving only carbon to carbon unsaturated bonds
• CPC Class Codes: B01J 20/3219 involving a particular spacer or linking group, e.g. for attaching an active group
• CPC Class Codes: B01J 20/327 Polymers obtained by reactions involving only carbon to carbon unsaturated bonds
• CPC Class Codes: B01J 20/3278 Polymers being grafted on the carrier
• CPC Class Codes: B01J 20/328 Polymers on the carrier being further modified
• CPC Class Codes: B01J 20/3285 Coating or impregnation layers comprising different type of functional groups or interactions, e.g. different ligands in various parts of the sorbent, mixed mode, dual zone, bimodal, multimodal, ionic or hydrophobic, cationic or anionic, hydrophilic or hydrophobic
• CPC Class Codes: B01J 20/3289 Coatings involving more than one layer of same or different nature
• CPC Class Codes: B01J 43/00 Amphoteric ion-exchange, i.e. using ion-exchangers having cationic and anionic groups; Use of material as amphoteric ion-exchangers; Treatment of material for improving their amphoteric ion-exchange properties ion-exchange chromatography processes B01D15/36
• CPC Class Codes: C12N 15/1006 by means of a solid support carrier, e.g. particles, polymers

Abstract

The invention relates to a material for the complex manipulation of nucleic acids as a platform technology for developing integrative, fully automatic systems for nucleic acid analysis. The inventive support material for complex nucleic acid analysis is characterised in that at least one covalently bonded layer is located on the surface, said layer bearing at least two different functional groups which are statistically distributed on the surface. At least one of the functional groups is negatively charged and at least one other functional group is positively charged or chemically reactive or has both of these properties.

Claims

1. Support material for complex nucleic acid analysis, characterized in that at least one covalently bonded layer is found on the surface that carries at least two different functional groups and that is statistically dispersed on the surface, whereby

at least one of the functional groups is negatively charged,

at least one other functional group is positively charged or chemically reactive or has both properties.

2. Support material according to claim 1, wherein at least one layer that is found on the surface in addition to at least one negatively charged functional group contains at least one positively charged functional group.

3. Support material according to claim 1, wherein at least one layer that is found on the surface in addition to at least one negatively charged functional group contains at least one chemically reactive functional group.

4. Support material according to claim 1, wherein at least one layer that is found on the surface in addition to at least one negatively charged functional group contains at least one functional group that is both positively charged and chemically reactive.

5. Support material according to claim 1, wherein at least one layer that is found on the surface in addition to at least one negatively charged functional group contains at least one positively charged functional group and at least one chemically reactive functional group.

6. Support material according to claims 1 to 5, wherein at least one of the negatively and/or positively charged functional groups is an ionic functional group.

7. Support material according to claims 1 to 6, wherein the negatively charged groups that are found on the surface are formed from compounds, capable of polymerization, with carboxyl, sulfonyl, sulfate and phosphate groups, especially derivatives of acrylic acid, methacrylic acid, styrenesulfonic acid and styrenephosphoric acid, acrylamidopropanesulfonic acid and/or mixtures thereof.

8. Support material according to claims 1, 2 and 4 to 7, wherein the positively charged functional groups consist of compounds, capable of polymerization, with amino or ammonium, sulfonium or phosphonium groups, especially derivatives of acrylic acid, methacrylic acid, styrene and/or mixtures thereof.

9. Support material according to claims 1 and 3 to 8, wherein the chemically reactive functional groups can be activated chemically and/or thermally and/or photochemically.

10. Support material according to claims 1 and 3 to 9, wherein the chemically reactive functional groups consist of immobilized sensitizers such as, for example, ketones, especially benzophenones, benzoins, xanthones or aliphatic or aromatic azides.

11. Support material according to claims 1 and 10, wherein at least one layer that is found on the surface in addition contains a UV-VIS-absorption-spectroscopically active substance, especially dyes such as fluorescein, rhodamine, anthracene, pyrene or derivatives thereof.

12. Support material according to claims 1 to 11, wherein at least one layer that is found on the surface is produced by modification of the surface toward a radical polymerization that is initiated on the surface, whereby the functionalities are produced simultaneously or in any sequence and are bonded covalently to the surface.

13. Support material according to claims 1 to 12, wherein at least one layer that is found on the surface is produced by heterogenic photo-initiated graft polymerization of functional monomers.

14. Support material according to claims 1 to 13, wherein a substance of H-abstraction type is used as a photo initiator, and the support material is used as a co-initiator, and the initiation is carried out by light excitation of the photo initiator.

15. Support material according to claims 1 to 13, wherein at least one layer that is found on the surface is produced by a chemically-initiated polymerization of functional monomers on the surface.

16. Support material according to claims 1 to 15, wherein at least one layer that is found on the surface contains a substance as an initiator that produces radicals or other starter species for polymerization after physical or chemical excitation.

17. Support material according to claims 1 to 16, wherein the functionalities on the surface of the support material are obtained by thermal or photochemical activation of bifunctional azides, such as, e.g., p-azidobenzenesulfonic acid.

18. Support material according to claims 1 to 17, wherein the negative and positive functional groups are applied in succession on the support material that is pretreated with a photo initiator, especially benzophenone, especially by a successive covering of the support material, such as, e.g., a polypropylene membrane, with solutions of acrylic acid and 2-aminoethylmethacyrlic acid amide hydrochloride, with subsequent functionalization by exposure in each case.

19. Support material according to claims 1 to 17, wherein the negative and positive functional groups are applied simultaneously to the support material that is pretreated with a photo initiator, especially benzophenone, especially by a simultaneous covering of the support material, such as, e.g., a polypropylene membrane, with a reaction solution that contains acrylic acid and 2-aminoethylmethacrylic acid amide hydrochloride, with subsequent functionalization by exposure.

20. Support material according to claims 1 to 19, wherein organic polymers, such as, e.g., polypropylene, polyethylene, polysulfone, polyether sulfone, polystyrene, polyvinyl chloride, polyacrylonitrile, cellulose and derivatives thereof, polyamides, polyimides, polytetrafluororthylene, polyvinylidene difluoride, polyester, polycarbonate, polyacrylates, polyacrylamide as well as copolymers or polymer blends are used as support materials.

21. Support material according to claims 1 to 19, wherein inorganic, especially mineral materials such as glasses, silicates, ceramics or metals as well as composites thereof with organic polymers are used as support materials.

22. Support material according to claims 1 to 21, wherein membranes, films, microtiter plates, slides, fibers, hollow fibers, mats, tissues, powders, granulates or particles, in each case porous or nonporous, are used as support materials for the reaction chamber.

23. Support material according to claims 1 to 22, wherein membranes with symmetrical or asymmetrical pore structure and pore sizes between a few nanometers and 10 μ

m are used as support materials.

24. Support material according to claims 1 to 19, wherein combinations of the materials that are presented in claims 20 to 23 are used as support materials.

25. Support material according to claims 1 to 24, wherein the support material is additionally functionalized in advance, e.g., hydrophilized.

26. Support material according to claims 1 to 25, wherein the pretreatment of the support material in an alkaline manner is carried out with a solution that consists of a strongly basic substance, preferably alkali-hydroxides or alkali-amides, and an alcohol, preferably in I-propanol, for up to 24 hours, and the support material is then washed until the wash water is neutral, and then it is dried.

27. Use of the support material according to claims 1 to 26 for complex and automatable analysis of nucleic acids, such as for detection of mutations, for detection of methylation patterns, for detection of SNP'"'"'s and/or for detection of restriction patterns.

36. Test kit for analysis of biological materials, especially nucleic acids, wherein support materials according to claims 1 to 26 and/or the process according to claims 28 to 35 as well as additional reaction components are used for nucleic acid analysis.

28. Process for complex and automatable analysis of biological materials, especially nucleic acids, wherein the necessary preparation and analysis steps, especially the extraction, binding, manipulation and detection of the nucleic acids are performed simultaneously or in succession on the same support material.

29. Process according to claim 28, wherein the starting samples that are to be examined are incubated on the support material with a cell lysis buffer, optionally with the incorporation of a proteolytic enzyme, optionally are mixed with a bonding buffer after cell lysis is completed, and the nucleic acid of the starting sample is bonded to the negatively functionalized groups and then washed, and is subsequently bonded to the positively functionalized groups by adding a buffer, especially a low-salt buffer.

30. Process according to claims 28 and 29, wherein the staring samples that are to be examined are incubated in the support material with a cell lysis buffer optionally with the incorporation of a proteolytic enzyme, optionally are mixed with a bonding buffer after cell lysis is completed, and the nucleic acid of the starting sample is bonded to the negatively functionalized groups and then washed, and is subsequently bonded to the chemically reactive groups by exposure to light and/or thermal treatment.

31. Process according to claims 28 to 30, wherein the nucleic acids that are bonded to the support material are manipulated, especially denatured, chemically modified, multiplied, selectively multiplied or digested with restriction enzymes.

32. Process according to claims 28 to 31, wherein the nucleic acids that are bonded to the support material are hybridized with specific probes.

33. Process according to claims 28 to 32, wherein the nucleic acids that are bonded to the support material are hybridized after manipulation with specific probes.

34. Process according to claims 28 to 33, wherein the detection of the hybridization is carried out indirectly by enzymatic means with labeled probes that are used.

35. Process according to claims 28 to 34, wherein the detection of the hybridization is carried out directly via the labeling of the probes.