Devices for storing array data and methods of using the same

• US 20030177380A1
• Filed: 03/18/2002
• Published: 09/18/2003
• Est. Priority Date: 03/18/2002
• Status: Abandoned Application

• Current Assignee: Agilent Technologies, Inc.
• Original Assignee: Agilent Technologies, Inc.
• Inventors: Woods, Stanley P.
• Application Number:
  US10/101,458
• Publication Number:
  US 20030177380A1
• Time in Patent Office: Days
• US Class Current: 713/200
• CPC Class Codes: G05B 23/024 Quantitative history assessment, e.g. mathematical relationships between available data; Functions therefor; Principal component analysis [PCA]; Partial least square [PLS]; Statistical classifiers, e.g. Bayesian networks, linear regression or correlation analysis; Neural networks

Abstract

Devices and methods for storing data related to at least one array are provided. The subject devices are characterized by an array holder that holds a substrate having at least one array and a data storage element operatively coupled thereto and configured to receive and store data related to a held array. Stored data may include calibration data and/or the number of times the array is scanned. The data storage element may be configured to communicate with at least one external apparatus using a physical connection. In using the subject devices, a subject array holder holds a substrate having at least one array and data related to the at least one array is received and stored by the data storage element. The data storage element may communicate with at least one external apparatus using a physical connection. Also provided are kits for practicing the subject methods.

Claims

1. A device for storing data related to at least one array, said device comprising:

an array holder for holding a substrate having at least one array; and

a data storage element operatively coupled to said array holder and configured to receive and store data related to said at least one array, wherein said data storage element is capable of communicating with at least one external apparatus using a physical connection.

2. The device according to claim 1, wherein said data storage element is capable of automatically storing data.

3. The device according to claim 1, wherein said data storage element is capable of automatically communicating with at least one external apparatus.

4. The device according to claim 1, wherein said external apparatus comprises at least one of an array assay apparatus, a wash apparatus, an incubator, an array scanner and a personal computer.

5. The device according to claim 1, wherein said physical connection comprises a communication element selected from the group consisting of Serial Peripheral Interface (“

SPI”

), MICROWIRE, I²C, +5 V serial, 1-Wire®

interface, General Purpose Interface Bus (“

GPIB”

), RS-232, Peripheral Component Interconnect (“

PCI”

), memory mapped I/O and Universal Serial Bus (“

USB”

).

6. The device according to claim 1, where said data is encrypted.

7. The device according to claim 1, wherein said data is password protected.

8. The device according to claim 1, wherein said data storage element is capable of storing from about 100 bytes to about 500 megabytes or more of data.

9. The device according to claim 1, wherein said data is at least one of dynamic data and static data.

10. The device according to claim 1, wherein said data is at least one of calibration data, array assay information and the number of times said at least one array is scanned.

11. The device according to claim 1, further comprising a sensor for measuring or monitoring a condition, event or process to which said array is subjected.

25. A system for storing data relating to at least one array, said system comprising:

(a) a substrate having at least one array; and

(b) a device according to claim 1 or claim 12.

55. A kit for storing data related to at least one array, said kit comprising:

(a) at least one device according to claim 1 and claim 12;

and

(b) instructions for using said at least one device.

56. The kit according to claim 55, further comprising at least one of a microprocessor, signal converter and a sensor.

57. The kit according to claim 55, further comprising at least one substrate having at least one array.

58. The kit according to claim 55, further comprising reagents for generating a labeled sample.

59. The kit according to claim 55, wherein said kit further comprises a buffer.

60. The kit according to claim 55, wherein said kit further comprises a wash medium.

12. A device for storing data related to at least one array, said device comprising:

an array holder for holding a substrate having at least one array; and

a data storage element operatively coupled to said array holder and configured to receive and store data related to said at least one array, wherein said data comprises at least one of calibration data, array assay information and the number of times said at least one array is scanned.

13. The device according to claim 12, wherein said calibration data comprises data related to at least one of array stage speed, focus depth, scanner mirror position, light source calibration, detector calibration, humidity, temperature, fluid volume, rate of fluid dispensation, fluid stringency, duration of incubation, gas concentration, duration of wash cycle, duration of drying, date of calibration, time of calibration, location of calibration and operator identification.

14. The device according to claim 12, wherein said data storage element is capable of communicating with at least one external apparatus.

15. The device according to claim 14, wherein said data storage element is capable of automatically communicating with said at least one external apparatus.

16. The device according to claim 14, wherein said device comprises at least one of a physical connection and a wireless system.

17. The device according to claim 16, wherein said physical connection comprises a communication element selected from the group consisting of Serial Peripheral Interface (“

SPI”

), MICROWIRE, I²C, +5 V serial, 1-Wire®

interface, General Purpose Interface Bus (“

GPIB”

), RS-232, Peripheral Component Interconnect (“

PCI”

), memory mapped I/O and Universal Serial Bus (“

USB”

).

18. The device according to claim 14, wherein said external apparatus comprises at least one of an array assay apparatus, a wash apparatus, an incubator, an array scanner and a personal computer.

19. The device according to claim 12, where said data is encrypted.

20. The device according to claim 12, wherein said data is password protected.

21. The device according to claim 12, wherein said data storage element is capable of storing from about 100 bytes to about 500 megabytes or more of data.

22. The device according to claim 12, wherein said data is at least one of dynamic data and static data.

23. The device according to claim 12, further comprising a sensor for measuring or monitoring a condition, event or process to which said array is subjected.

24. The device according to claim 12, wherein said data storage element is capable of automatically storing data.

26. A method of storing data related to at least one array, said method comprising:

(a) providing a device comprising;

(i) an array holder for holding a substrate having at least one array, and

(ii) a data storage element operatively coupled to said array holder and configured to receive and store data related to said at least one array;

(b) placing a substrate having at least one array in said array holder;

(c) receiving and storing data related to said at least one array in said data storage element;

(d) physically connecting said array holder with at least one external apparatus, wherein data is communicated between said data storage element and said at least one external apparatus via said physical connection.

27. The method according to claim 26, further comprising the steps of measuring at least one condition, event or process related to said at least one array.

28. The method according to claim 26, further comprising the steps of automatically activating or deactivating at least one external apparatus.

29. The method according to claim 26, wherein about 100 bytes to about 500 megabytes or more of said data is stored.

30. The method according to claim 26, wherein said data is at least one of static and dynamic data.

31. The method according to claim 26, wherein said data is stored automatically.

32. The method according to claim 26, wherein said data is communicated automatically.

33. The method according to claim 26, comprising, following exposure of said at least one array to a sample:

reading said at least one array.

34. The method according to claim 33, further comprising forwarding data representing a result of said reading.

35. The method according to claim 34, further comprising the step of transmitting said data to a remote location.

36. The method according to claim 33, further comprising receiving data representing a result of said reading obtained by the method of claim 33.

37. The method according to claim 26, wherein said data is related to at least one of calibration data and the number of times the at least one array is scanned.

38. The method according to claim 26, wherein said data is received and stored substantially concurrently with the occurrence of an array condition, event or process.

39. A method of storing data related to at least one array, said method comprising:

(a) providing a device comprising;

(i) an array holder for holding a substrate having at least one array, and

(ii) a data storage element operatively coupled to said array holder configured to receive and store data related to said at least one array;

(b) placing a substrate having at least one array in said array holder; and

(c) receiving and storing at least one of calibration data and the number of times the array has been scanned in said data storage element.

40. The method according to claim 39, further comprising communicating data between said data storage element and said at least one external apparatus.

41. The method according to claim 40, wherein said data is communicated using at least one of a physical connection and a wireless system.

42. The method according to claim 40, wherein said communication is accomplished automatically.

43. The method according to claim 39, further comprising the steps of automatically activating or deactivating at least one external apparatus.

44. The method according to claim 39, further comprising the steps of measuring at least one condition, event or process related to said at least one array.

45. The method according to claim 39, wherein about 100 bytes to about 500 megabytes or more of said data is stored.

46. The method according to claim 39, further comprising receiving and storing at least one of static and dynamic data.

47. The method according to claim 39, wherein said data is received and stored automatically.

48. The method according to claim 39, comprising, following exposure of said at least one array to a sample:

reading said at least one array.

49. The method according to claim 48, further comprising forwarding data representing a result of said reading.

50. The method according to claim 49, further comprising the step of transmitting said data to a remote location.

51. The method according to claim 48, further comprising receiving data representing a result of said reading obtained by the method of claim 48.

52. The method according to claim 39, wherein said data is received and stored substantially concurrently with the occurrence of an array condition, event or process.

53. A method for processing an array, said method comprising:

(a) providing a device comprising;

(i) an array holder for holding a substrate having at least one array, and

(ii) a data storage element operatively coupled to said array holder configured to receive and store data related to said at least one array;

(b) placing a substrate having at least one array in said array holder;

(c) exposing said at least one array to at least one array process;

(d) receiving and storing data related to said at least one array process in said data storage element; and

(e) physically connecting said array holder with at least one external apparatus, wherein data is communicated between said data storage element and said at least one external apparatus via said physical connection.

54. A method for processing an array, said method comprising:

(a) providing a device comprising;

(i) an array holder for holding a substrate having at least one array, and

(ii) a data storage element operatively coupled to said array holder configured to receive and store data related to said at least one array;

(b) placing a substrate having at least one array in said array holder;

(c) exposing said at least one array to at least one array process; and

(d) receiving and storing at least one of calibration data and the number of times the array has been scanned in said data storage element.