Microarray channel devices produced by a block mold process

• US 20030203366A1
• Filed: 04/26/2002
• Published: 10/30/2003
• Est. Priority Date: 04/26/2002
• Status: Abandoned Application

• Current Assignee: Large Scale Profeomics Corporation
• Original Assignee: Large Scale Proteomics Corporation
• Inventors: Lim, Drahoslav, Anderson, Norman G., Braatz, James A.
• Application Number:
  US10/132,575
• Publication Number:
  US 20030203366A1
• Time in Patent Office: Days
• US Class Current: 435/6
• CPC Class Codes: C12Q 1/6837 using probe arrays or probe chips C12Q1/6874 takes precedence
• CPC Class Codes: G01N 33/54386 Analytical elements

Abstract

Microarrays are made from sections of a molded block having many channels. These channels, which are formed by casting and/or embedding a rod in a moldable solid, are used to immobilize biological and chemical binding components after rod removal. The microarrays can be used in general biological assays, clinical evaluations and chemical library analyses.

Claims

1. A device comprising a plurality of parallel channels adjacent to other channels within a suitably shaped block at addressable locations with respect to each other wherein said channels are formed by removing a material from within a solid block thereby forming said channels, and further wherein said channels contain different agents of interest by immobilizing said agents within separate channels.

2. The device according to claim 1, wherein said suitably shaped block comprises materials selected from the group consisting of polymers, copolymers, their blends, and polymers formed by reactive monomers, prepolymers and polymers.

3. The device according to claim 1, wherein the agent of interest is selected from the group consisting of a microorganism, ligand, antibody, antigen, nucleic acid, polysaccharide, protein, combinatorially produced compound, receptor, plant or animal cells, organelles and fractions thereof.

4. The device according to claim 1, wherein said agents are adhered, adsorbed or linked to the inner surface of each separate channel.

6. The device according to claim 1, wherein all or most of the channels contain a different immobilized agent of interest.

7. The device according to claim 1, wherein at least one of the channels contains a dye.

8. The device according to claim 1, wherein different channels contain different concentrations of the same agent of interest.

9. The device according to claim 1, wherein each channel contains no more than one immobilized agent of interest.

19. A method for making an array comprising forming the device of claim 1 and cutting the device transversely or at an angle to form a section such that a fixed position of the at least one channel with respect to a plurality of other channels is maintained.

20. The method of claim 19, wherein said sections are less than 1 mm thick.

21. An array prepared by the method of claim 19, comprising a plurality of channels in intrinsically addressable locations on the array, each channel containing an agent of interest immobilized within or on the inner surface of said channel, wherein different channels contain a different agent of interest immobilized therein or thereon, and wherein each agent of interest is located at a known address.

22. A binding assay for detecting an analyte in a sample wherein said analyte binds to at least one agent of interest in an array comprising;

(a) contacting a sample suspected of containing an analyte with the array of claim 21 under conditions permitting the binding of analyte to agent of interest;

(b) detecting the presence or absence of binding between analyte and each channel in the array; and

(c) determining the presence or absence of the analyte by the presence of any binding being detected at a predetermined channel of the array.

23. The binding assay of claim 22, further comprising;

(i) adding a labeled detection agent capable of binding to channels having either analyte bound to agent of interest or channels not having the analyte so bound, but not both, and

(ii) detecting the presence of the labeled detection agent in one or more channels of the array.

24. An array prepared by the method of claim 19, comprising at least about 50 reactive surfaces per square centimeter wherein each reactive surface contains an agent of interest that is not chemically bound to the inner surface of said reactive surface.

25. The microarray of claim 24, containing at least about 250 reactive surfaces per square centimeter.

26. An array prepared by the method of claim 24, comprising at least about 500 channels per square centimeter wherein each channel contains an agent of interest selected from the group consisting of a macromolecule, a complex, a microorganism, a plant or animal cell, an organelle or a fraction of a biological cell.

10. A method of forming a device comprising a plurality of parallel channels adjacent to other channels within a suitably shaped block at addressable locations with respect to each other wherein said channels are formed by removing a material to form said channels, and further wherein said channels contain different agents of interest by immobilizing said agents within each separate channel by means of said removal comprising:

(a) embedding a plurality of solid materials in a moldable surface of a blocking forming material;

(b) removing said solid materials embedded in a block to form the channels; and

(c) adhering, adsorbing or linking at least one agent of interest to the inside of the channel of step (b).

11. The method of claim 10, wherein said at least one solid material is a fiber or rod and further comprising aligning said fiber or rod with other fibers or rods in a parallel fashion before embedding.

12. The method of claim 11, wherein the solid material is selectively degradable under conditions where the block is not degraded. .

13. The method of claim 11, wherein the solid materials are removable from said block to form the channels.

14. The method of claim 11, wherein said solid material is a solid fiber or rod embedded in a suitably shaped block comprises materials selected from the group consisting of polymers, copolymers, their blends, and polymers formed by reactive monomers, prepolymers and polymers.

15. The method of claim 10, wherein removing step (b) further comprises:

(i) exposing of available moieties of the inner surface of said channel comprising said moldable surface or

(ii) derivatizing the inner surface of said channels comprising said moldable surface.

16. The method of claim 10, wherein said removing step is selected form the group consisting of degrading, dissolving, withdrawing, melting, sublimation and washing of the embedded solid.

17. The method of claim 10, wherein the means of said removal is selected from the group consisting of centrifugation, application of negative pressure, application of positive pressure, countersinking alternate polar ends, exploitation of coefficients of expansion, heating, cooling, burning, drilling, etching, coring and pulling.

18. The method of claim 10, wherein said moldable surface becomes substantially fixed around said solid material thereby allowing said moldable surface to conform to the contours of said solid, further wherein removal casts a channel surface within the substantially fixed moldable surface.

27. A method of forming a device comprising a plurality of parallel channels adjacent to other channels within a suitably shaped block at addressable locations with respect to each other wherein said channels are formed by removing solid material to form said channels, and further wherein said channels contain different agents of interest by immobilizing said agents within each separate channel by means of said removal comprising:

(a) removing said solid materials from said block to form the channels and

(b) adhering, adsorbing or linking at least one agent of interest to the inside of the channel of step (a).

28. The method of claim 27, wherein the solid material being removed is of the same material as the block.

29. The method of claim 27, wherein the solid material is removed by heating, cooling, burning, drilling, etching and coring.

30. The method of claim 27, wherein the block is made of materials selected from the group consisting of polymers, copolymers, their blends, and polymers formed by reactive monomers, prepolymers and polymers.