Methylated immunostimulatory oligonucleotides and methods of using the same

• US 20040009944A1
• Filed: 05/12/2003
• Published: 01/15/2004
• Est. Priority Date: 05/10/2002
• Status: Abandoned Application

• Current Assignee: Tekmira Pharmaceuticals Corporation
• Original Assignee: Inex Pharmaceuticals Corporation
• Inventors: Tam, Ying Kee, Klimuk, Sandra K., Semple, Sean C., Chikh, Ghania
• Application Number:
  US10/437,275
• Publication Number:
  US 20040009944A1
• Time in Patent Office: Days
• US Class Current: 514/44
• CPC Class Codes: A61K 2039/541 Mucosal route
• CPC Class Codes: A61K 2039/55555 Liposomes; Vesicles, e.g. nanoparticles; Spheres, e.g. nanospheres; Polymers
• CPC Class Codes: A61K 2039/55561 CpG containing adjuvants; Oligonucleotide containing adjuvants
• CPC Class Codes: A61K 39/0011 Cancer antigens
• CPC Class Codes: A61K 39/39 characterised by the immunostimulating additives, e.g. chemical adjuvants
• CPC Class Codes: C12N 15/117 Nucleic acids having immunomodulatory properties, e.g. containing CpG-motifs
• CPC Class Codes: C12N 2310/315 Phosphorothioates
• CPC Class Codes: C12N 2310/3341 5-Methylcytosine

Abstract

The invention discloses that methylated nucleic acids, particularly methylated oligonucleotides, and more particularly methylated oligonucleotides bearing a methylated cytosine of a CpG dinucleotide motif can be made immunostimulatory in vivo, by encapsulation of the nucleic acid in a lipid particle. It is further disclosed that encapsulated methylated nucleic acids that are ordinarily not immunostimulatory in vivo are as effective or even more effective than their encapsulated unmethylated counterparts. Also disclosed are methods for activating and/or expanding dendritic cell populations in response to antigenic stimulation using the compositions and methods disclosed herein.

Claims

1. A lipid-methylated nucleic acid formulation for stimulating an immune response in an animal, said formulation comprising a lipid component and a nucleic acid component comprising a methylated nucleic acid sequence.

2. The lipid-nucleic acid formulation according to claim 1, wherein said methylated nucleic acid sequence comprises at least one CpG dinucleotide having a methylated cytosine.

3. The formulation according to claim 2, wherein said methylated cytosine comprises a methyl or hydroxymethyl group attached to the carbon-4 position (4-mC) or carbon-5 position (5-mC).

4. An adjuvant comprising a lipid-nucleic acid (LNA) formulation, wherein said LNA formulation comprises:

a) a lipid component comprising at least one cationic lipid; and

b) a nucleic acid component comprising at least one methylated oligonucleotide;

wherein said adjuvant is capable of stimulating dendritic cells in vivo in response to antigenic stimulation.

5. The adjuvant according to claim 4, wherein said adjuvant is capable of stimulating dendritic cell expansion in vivo characterized by an increase in the number of antigen-presenting cells expressing at least one of a CD11c and a DEC205 marker.

6. The adjuvant according to claim 4, wherein said adjuvant is capable of stimulating dendritic cell activation in vivo characterized by an increase in the number of antigen-presenting cells co-expressing at least one of a CD11c and a DEC205 marker in conjunction with a CD86 marker.

7. The adjuvant according to claim 4, wherein said at least one methylated oligonucleotide comprises a single CpG dinucleotide having a methylated cytosine.

8. The adjuvant according to claim 7, wherein said at least one methylated oligonucleotide comprises the sequence 5′

TAACGTTGAGGGGCAT 3′

(ODN1 m).

9. The adjuvant according to claim 4, wherein said at least one methylated oligonucleotide comprises two CpG dinucleotides, and wherein at least one of the cytosines in said CpG dinucleotides is methylated.

10. The formulation according to claim 9, wherein said methylated nucleic acid sequence is an oligonucleotide having the sequence 5′

TTCCATGACGTTCCTGACGTT 3′

(ODN2m).

11. The adjuvant according to claim 4, wherein said at least one methylated oligonucleotide comprises at least one CpG dinucleotide having a methylated cytosine.

12. The adjuvant according to claim 4, wherein said oligonucleotide comprises a modified phosphate backbone.

13. The adjuvant according to claim 12, wherein said modified phosphate backbone is phosphorothioate.

14. A vaccine comprising a lipid-nucleic acid (LNA) formulation in combination with at least one target antigen, wherein said at least one target antigen is mixed with or associated with said LNA formulation, said formulation comprising:

a) a lipid component comprising at least one cationic lipid; and

b) a nucleic acid component comprising at least one methylated oligonucleotide, wherein said vaccine is capable of stimulating dendritic cells in vivo in response to presentation of said at least one target antigen by said formulation to antigen-presenting cells.

15. The vaccine according to claim 14, wherein said vaccine is capable of stimulating dendritic cell expansion in vivo characterized by an increase in the number of antigen-presenting cells expressing at least one of a CD11c and a DEC205 marker.

16. The vaccine according to claim 14, wherein said vaccine is capable of stimulating dendritic cell activation in vivo characterized by an increase in the number of antigen-presenting cells co-expressing at least one of a CD11c and a DEC205 marker in conjunction with a CD86 marker.

17. The vaccine according to claim 14, wherein said at least one methylated oligonucleotide comprises a single CpG dinucleotide having a methylated cytosine.

18. The vaccine according to claim 14, wherein said at least one methylated oligonucleotide comprises a plurality of CpG dinucleotides, and wherein at least one of said CpG dinucleotides comprises a methylated cytosine.

19. The vaccine according to claim 14, wherein said at least one methylated oligonucleotide comprises at least one CpG dinucleotide having a methylated cytosine.

20. The vaccine according to claim 14, wherein said at least one target antigen comprises a microbial antigen.

21. The vaccine according to claim 14, wherein said at least one target antigen comprises a tumor-associated antigen.

22. The vaccine according to claim 14, wherein said at least one target antigen comprises a plurality of epitopes from the same antigen.

23. The vaccine according to claim 14, wherein said at least one target antigen comprises a plurality of epitopes from different antigens.

24. The vaccine according to claim 14, wherein said oligonucleotide comprises a modified phosphate backbone.

25. The vaccine according to claim 24, wherein said modified phosphate backbone is phosphorothioate.

27. The method according to claim 23, wherein said LNA formulation is capable of stimulating dendritic cell expansion in vivo characterized by an increase in the number of antigen-presenting cells expressing at least one of a CD11c and a DEC205 marker.

28. The method according to claim 23, wherein said LNA formulation is capable of stimulating dendritic cell activation in vivo characterized by an increase in the number of antigen-presenting cells co-expressing at least one of a CD11c and a DEC205 marker in conjunction with a CD86 marker.

26. A method for stimulating an enhanced host immune response to antigenic stimulation comprising administering to said host a lipid-nucleic acid (LNA) formulation, said LNA formulation comprising:

a) a lipid component comprising at least one cationic lipid; and

b) a nucleic acid component comprising at least one methylated oligonucleotide;

wherein said LNA formulation is capable of stimulating dendritic cells in vivo in response to antigenic stimulation.

29. The method according to claim 26, wherein said at least one methylated oligonucleotide comprises a single CpG dinucleotide having a methylated cytosine.

30. The method according to claim 29, wherein said at least one methylated oligonucleotide comprises the sequence 5′

TAACGTTGTGGGGCA 3′

(ODN1m).

31. The method according to claim 26, wherein said at least one methylated oligonucleotide comprises at least two CpG dinucleotides, and wherein the cytosine in at least one of said CpG dinucleotides is methylated.

32. The method according to claim 31, wherein said methylated nucleic acid sequence is an oligonucleotide having the sequence 5′

TTCCATGACGTTCCTGACGTT 3′

(ODN2m).

33. The method according to claim 26, wherein said LNA formulation is administered in combination with at least one target antigen, wherein said at least one target antigen is mixed with or associated with said LNA formulation.

34. The method according to claim 33, wherein said at least one target antigen is mixed with said LNA formulation.

35. The method according to claim 33, wherein said at least one target antigen is associated with said LNA formulation.

36. The method according to claim 26, wherein said methylated oligonucleotide comprises a modified phosphate backbone.

37. The method according to claim 36, wherein said methylated oligonucleotide comprises a phosphorothioate backbone.

38. A method for stimulating dendritic cells, comprising contacting at least one dendritic cell with a lipid-methylated nucleic acid formulation comprising a lipid component and a nucleic acid component comprising a methylated nucleic acid sequence.

40. The method according to claim 38 or 39, wherein stimulating denditic cells comprises dendritic cell expansion characterized by an increase in the number of antigen-presenting cells expressing at least one of a CD11c and a DEC205 marker.

41. The method according to claim 38 or 39, wherein stimulating dendritic cells comprises dendritic cell activation characterized by an increase in the number of antigen-presenting cells co-expressing at least one of a CD11c and a DEC205 marker in conjunction with a CD86 marker.

42. The method according to claim 38, wherein said methylated nucleic acid sequence comprises at least one CpG dinucleotide having a methylated cytosine.

43. The method according to claim 42, wherein said methylated cytosine comprises a methyl or hydroxymethyl group attached to the carbon-4 position (4-mC) or carbon-5 position (5-mC).

39. A method for stimulating host dendritic cells in vivo, comprising administering to said host a lipid-methylated nucleic acid formulation comprising a lipid component and a nucleic acid component comprising a methylated nucleic acid sequence, wherein said formulation is capable of stimulating dendritic cells in vivo in response to antigenic stimulation.

44. A method for simultaneously delivering antigenic and adjuvant immune stimulation to antigen presenting cells, comprising the administration of a lipid-nucleic acid (LNA) formulation associated with a target antigen, said LNA formulation comprising:

a) a lipid component comprising at least one cationic lipid; and

b) a nucleic acid component comprising at least one oligonucleotide having at least one CpG dinucleotide;

wherein said LNA formulation is capable of stimulating dendritic cells in vivo.