Methods and apparatus for reducing artifacts in mass spectrometers

• US 20040011956A1
• Filed: 05/30/2003
• Published: 01/22/2004
• Est. Priority Date: 05/30/2002
• Status: Active Grant

• Current Assignee: MDS Incorporated (Molecular Devices), Applied Biosystems LLC (Thermo Fisher Scientific Incorporated)
• Original Assignee: MDS Incorporated (Molecular Devices)
• Inventors: Hager, James, Collings, Bruce A., Stott, William R., Londry, Frank R.
• Granted Patent: US 6,909,089 B2
• Time in Patent Office: Days
• US Class Current: 250/292
• CPC Class Codes: H01J 49/4225 Multipole linear ion traps, e.g. quadrupoles, hexapoles

Abstract

The invention solves the problem of artifact ghost peaks which can sometimes arise in mass spectrometers that employ a quadrupole rod set for both trapping and mass analyzing the trapped ions. The problem arises as a result of randomly distributed voltage gradients along the length of the rods. Three solutions are presented. The first approach involves improving the conduction characteristics of the rod sets. The second approach involves the application of at least one continuous axial DC field to the trapping quadrupole rod set in order to urge ions towards a pre-determined region of the trap, thereby avoiding voltage gradients. The third approach involves the application of one or more discrete axial fields to create one or more potential barriers along the axial dimension of the trap (in addition to the barriers used to initially trap the ions). These barriers prevent ions of differing voltage gradients from equilibrating with one another.

Claims

1. A method of operating a mass spectrometer having an elongate rod set which has an entrance end, a longitudinal axis, and an end distal of said entrance end, the method including:

(a) admitting ions into said rod set via said entrance end;

(b) trapping at least some of the ions introduced into said rod set by producing an RF field between the rods and a barrier field adjacent to said distal end;

(c) after trapping ions, establishing at least one additional barrier field in the interior of said rod set to define at least two compartments of trapped ions;

(d) ejecting at least some ions of a selected mass-to-charge ratio from selected, but not all, of said compartments; and

(e) detecting at least some of the ejected ions.

2. A method according to claim 1, wherein ions are detected from only one of said compartments.

3. A method according to claim 2, including producing a barrier field adjacent said entrance end, prior to step (c).

4. A method according to claim 3, wherein one additional barrier field is produced and said selected compartment is defined between said additional barrier field and said barrier field adjacent said distal end.

5. A method according to claim 4, wherein:

said distal end functions as an exit end for said ions;

said RF field and the barrier field adjacent said exit end interact in an extraction region adjacent to said exit end to produce a fringing field, said extraction region being located within said selected compartment; and

ions in at least said extraction region are mass selectively energized to overcome the barrier field adjacent said exit end and are ejected from said rod set along the longitudinal axis.

6. A method according to claim 3, wherein said ions are ejected in one or more directions transverse to said longitudinal axis and ions substantially only from said selected compartment are detected.

7. A method according to claim 6, wherein each rod of said rod set includes an elongate aperture and ions are ejected through said apertures by operating the rod set in a mass-selective instability mode.

8. A method according to claim 6, wherein ions are ejected in said transverse direction by mass-selectively resonantly exciting the trapped ions.

9. A method according to claim 6, wherein one additional barrier field is produced and said selected trapped ion compartment is located between said additional barrier field and the barrier field adjacent said distal end.

10. A method according to claim 6, wherein two additional barrier fields are produced and said selected trapped ion compartment is located between said two additional barrier fields.

11. A method according to claim 6, wherein one additional barrier field is produced and said selected trapped ion compartment is located between said additional barrier field and the barrier field adjacent said entrance end.

12. A mass spectrometer, comprising:

a multipole rod set, which defines a volume;

power supply means connected to said rod set for generating an RF field in said volume in order to constrain ions of a selected range of mass-to-charge ratios along first and second orthogonal dimensions;

means for introducing and trapping ions in said volume along a third dimension substantially orthogonal to said first and second dimensions;

means for defining at least two compartments of trapped ions; and

means for detecting ions from selected, but not all, of said compartments.

13. A device according to claim 12, wherein ions are detected from only one of said compartments.

14. A device according to claim 13, wherein said means for introducing and trapping ions along said third dimension include means for producing a barrier field adjacent an ion entrance end of said rod set.

15. A device according to claim 14, wherein ions are ejected from said volume along said third dimension, and said means for trapping ions along said third dimension includes means for producing a barrier field adjacent an exit end of said rod set.

16. A device according to claim 15, wherein:

said RF field and the barrier field adjacent said exit end interact in an extraction region adjacent to said exit end to produce a fringing field, said extraction region being located within said selected compartment; and

ions in at least said extraction region are mass selectively energized to overcome the barrier field adjacent said exit end and are ejected from said rod set along the said third dimension.

17. A device according to claim 12, wherein said compartmentalization means includes at least one DC biased conductive ring surrounding said volume.

18. A device according to claim 14, wherein said ions are ejected along said first and second dimensions and ions substantially only from said selected compartment are detected.

19. A device according to claim 18, wherein each rod of said rod set includes an elongate aperture and ions are ejected through said apertures by operating the rod set in a mass-selective instability mode.

20. A device according to claim 18, wherein ions are ejected in said first and second dimensions by mass-selectively resonantly exciting the trapped ions.

21. In an ion trap which employs a two-dimensional RF field to constrain ions in two dimensions and at least one barrier potential to constrain ions in a direction substantially normal to said two dimensions, an improvement comprising:

means for defining at least two compartments of trapped ions; and

means for ejecting and detecting ions from at least one, but not all, of the compartments.

22. The improvement according to claim 21, wherein ions are detected from only one of said compartments.

23. A method of operating a mass spectrometer having an elongate rod set which has an entrance end, a longitudinal axis, and an end distal to said entrance end, the method including:

(a) admitting ions into said rod set via said entrance end;

(b) trapping at least some of the ions introduced into said rod set by producing an RF field between the rods and by producing a barrier field adjacent said distal end;

(c) urging said trapped ions towards a pre-determined region of the volume defined by said rod set;

(d) ejecting at least some ions of a selected mass-to-charge ratio from the pre-determined region; and

(e) detecting at least some of the ejected ions.

24. A method according to claim 23, wherein said urging of ions is accomplished by establishing at least one DC field along said longitudinal axis.

25. A method according to claim 24, wherein said DC field is established by a biased set of electrodes disposed adjacent to said rod set, each said electrode having a T-shaped cross section including a stem, the depth of the stem varying over the length of said rod set so as to produce a substantially uniform electric field along the longitudinal axis.

26. A method of operating a mass spectrometer having an elongate rod set which has an entrance end, an exit end, and a longitudinal axis, the method including:

(a) admitting ions into said rod set via said entrance end;

(b) trapping at least some of the ions introduced into said rod set by producing an RF field between the rods and by producing a barrier field adjacent to said exit end;

(c) establishing a DC field along the longitudinal axis in order to urge ions towards said exit end;

(d) axially ejecting at least some ions of a selected mass-to-charge ratio; and

(e) detecting at least some of the ejected ions.

27. A method according to claim 26, wherein said DC field is established by a biased set of electrodes disposed adjacent to said rod set.

28. A method according to claim 27, wherein each said electrode has a T-shaped cross section including a stem, the depth of the stem varying over a pre-determined length of said rod set.

29. A method of operating a mass spectrometer having an elongate rod set which has an entrance end, a longitudinal axis, and an end distal of said entrance end, the method including:

(a) admitting ions into said rod set via said entrance end;

(b) trapping at least some of the ions introduced into said rod set by producing an RF field between the rods and by producing a barrier field adjacent to said distal end;

(c) establishing at least one DC field along said longitudinal axis in order to urge ions towards a pre-determined region along said longitudinal axis;

(d) ejecting at least some ions of a selected mass-to-charge ratio in a direction transverse to said longitudinal axis; and

(e) detecting at least some of the ejected ions.

30. A method according to claim 29, wherein said DC fields are established by one or more biased sets of electrodes disposed adjacent to said rod set.

31. A method according to claim 30, wherein each said electrode has a T-shaped cross section including a stem, the depth of the stem varying over a pre-determined length of said rod set.

32. A mass spectrometer, comprising:

an elongate rod set which has an entrance end, a longitudinal axis, and an end distal to said entrance end, said rod set defining a volume;

means for admitting ions into said rod set via said entrance end;

means for trapping at least some of the ions introduced into said rod set by producing an RF field between the rods and by producing a barrier field adjacent said distal end;

means for establishing at least one DC field along said longitudinal axis in order to urge said trapped ions towards a pre-determined region of the volume defined by said rod set;

means for ejecting at least some ions of a selected mass-to-charge ratio from the pre-determined region; and

means for detecting at least some of the ejected ions.

33. A device according to claim 32, wherein said DC fields are established by one or more biased sets of electrodes disposed adjacent to said rod set.

34. A device according to claim 33, wherein each said electrode has a T-shaped cross section including a stem, the depth of the stem varying over a pre-determined length of said rod set.