Methods and systems for analyzing complex biological systems
First Claim
1. A system for examining chemical components in a biological sample, comprising:
- a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component, wherein said data comprise data from at least two processes;
c) means for storing said data in said computer tracking system, wherein said data are linked to said unique identifier; and
d) means for characterizing and/or identifying said chemical components.
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Accused Products
Abstract
The present invention provides methods and systems for organizing complex and disparate data. More specifically, the present invention provides methods and systems for organizing complex and disparate data into coherent data sets. Coherent data sets resulting from the methods and systems of the present invention serve as models for biological systems. Methods and systems for integrating data and creating coherent data sets are useful for numerous biological applications, such as, for example, determining gene function, identifying and validating drug and pesticide targets, identifying and validating drug and pesticide candidate compounds, profiling drug and pesticide compounds, producing a compilation of health or wellness profiles, determining compound site(s) of action, identifying unknown samples, and numerous other applications in the agricultural, pharmaceutical, forensic, and biotechnology industries.
81 Citations
233 Claims
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1. A system for examining chemical components in a biological sample, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component, wherein said data comprise data from at least two processes;
c) means for storing said data in said computer tracking system, wherein said data are linked to said unique identifier; and
d) means for characterizing and/or identifying said chemical components. - View Dependent Claims (4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18)
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19. A system for examining chemical components in a biological sample, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component, wherein said data comprise data from at least three processes;
c) means for storing said data in said computer tracking system, wherein said data are linked to said unique identifier; and
d) means for characterizing and/or identifying said chemical components. - View Dependent Claims (2, 3, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39)
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40. A system for examining metabolites in a biological sample, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component;
c) means for storing in said computer tracking system said chemical component data, wherein said data are linked to said unique identifier;
d) means for characterizing and/or identifying said chemical components; and
e) means for linking said characterized and/or identified chemical components to metabolites in biochemical pathways. - View Dependent Claims (41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53)
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54. A system for examining metabolites in a biological sample, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component, wherein said data comprise data from at least two processes;
c) means for storing in said computer tracking system said chemical component data, wherein said data are linked to said unique identifier;
d) means for characterizing and/or identifying said chemical components; and
e) means for linking said characterized and/or identified chemical components to metabolites in biochemical pathways. - View Dependent Claims (55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68)
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69. A system for examining metabolites in a biological sample, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component, wherein said data comprise data from at least three processes;
c) means for storing in said computer tracking system said chemical component data, wherein said data are linked to said unique identifier;
d) means for characterizing and/or identifying said chemical components; and
e) means for linking said characterized and/or identified chemical components to metabolites in biochemical pathways. - View Dependent Claims (70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86)
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87. A system for examining metabolites in a biological sample, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component;
c) means for storing said data in said computer tracking system, wherein said data are linked to said unique identifier;
d) means for characterizing and/or identifying said chemical components; and
e) means for linking said characterized and/or identified chemical components to metabolites in biochemical pathways or to phenotypes. - View Dependent Claims (88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100)
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101. A system for examining metabolites in a biological sample, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component, wherein said data comprise data from at least two processes;
c) means for storing said data in said computer tracking system, wherein said data are linked to said unique identifier;
d) means for characterizing and/or identifying said chemical components; and
e) means for linking said characterized and/or identified chemical components to metabolites in biochemical pathways or to phenotypes. - View Dependent Claims (102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115)
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116. A system for examining metabolites in a biological sample, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component, wherein said data comprise data from at least three processes;
c) means for storing said data in said computer tracking system, wherein said data are linked to said unique identifier;
d) means for characterizing and/or identifying said chemical components; and
e) means for linking said characterized and/or identified chemical components to metabolites in biochemical pathways or to phenotypes. - View Dependent Claims (117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133)
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134. A system for establishing a signature profile indicative of the physiological status of an individual, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for storing in said computer tracking system data from said sample, wherein said data are linked to said unique identifier;
c) means for comparing said linked data to a reference; and
d) means for determining the most informative of said compared data;
wherein said most informative data are a signature profile indicative of physiological status. - View Dependent Claims (135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148)
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149. A system for establishing a signature profile indicative of the physiological status of an individual, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for storing in said computer tracking system metabolite data from said sample, wherein said data are linked to said unique identifier;
c) means for comparing said linked data to a reference; and
d) means for determining the most informative of said compared data;
wherein said most informative data are a signature profile indicative of physiological status. - View Dependent Claims (150, 151, 152, 153, 154, 155, 156, 157, 158, 159)
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160. A system for establishing a signature profile indicative of the physiological status of an individual, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for storing in said computer tracking system metabolite data from said sample, wherein said data are from at least two different processes and are linked to said unique identifier;
c) means for comparing said linked data to a reference; and
d) means for determining the most informative of said compared data;
wherein said most informative data are a signature profile indicative of physiological status. - View Dependent Claims (161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171)
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172. A system for establishing a signature profile indicative of the physiological status of an individual, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for storing in said computer tracking system metabolite data from said sample, wherein said data are from at least three different processes and are linked to said unique identifier;
c) means for comparing said linked data to a reference; and
d) means for determining the most informative of said compared data;
wherein said most informative data are a signature profile indicative of physiological status. - View Dependent Claims (173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186)
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187. A system for establishing a signature profile indicative of the physiological status of an individual, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component;
c) means for storing said data in said computer tracking system, wherein said data are linked to said unique identifier;
d) means for comparing said linked data to a reference; and
e) means for determining the most informative of said compared data;
wherein said most informative data are a signature profile indicative of physiological status. - View Dependent Claims (188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200)
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201. A system for establishing a signature profile indicative of the physiological status of an individual, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component, wherein said data comprise data from at least two processes;
c) means for storing said data in said computer tracking system, wherein said data are linked to said unique identifier;
d) means for comparing said linked data to a reference; and
e) means for determining the most informative of said compared data;
wherein said most informative data are a signature profile indicative of physiological status. - View Dependent Claims (202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215)
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216. A system for establishing a signature profile indicative of the physiological status of an individual, comprising:
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a) means for entering a unique identifier of at least one biological sample into a computer tracking system;
b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component, wherein said data comprise data from at least three processes;
c) means for storing said data in said computer tracking system, wherein said data are linked to said unique identifier;
d) means for comparing said linked data to a reference; and
e) means for determining the most informative of said compared data;
wherein said most informative data are a signature profile indicative of physiological status. - View Dependent Claims (217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233)
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Specification