Human elongase genes and uses thereof
First Claim
Patent Images
1. An isolated polynucleotide sequence, comprising a polynucleotide sequence which is selected from the group consisting of:
- (a) a sequence comprising SEQ ID NO;
4;
(b) a sequence comprising SEQ ID NO;
8;
(c) a sequence comprising SEQ ID NO;
11;
(d) a sequence which is at least 80% homologous with a sequence of any of (a) to (c);
(e) a sequence which is at least 90% homologous with a sequence of any of (a) to (c);
(f) a sequence which is at least 95% homologous with a sequence of any of (a) to (c);
(g) a sequence which is at least 98% homologous with a sequence of any of (a) to (c);
(h) a sequence which is at least 99% homologous with a sequence of any of (a) to (c); and
;
(i) a sequence which hybridizes to any of (a) to (h) under stringent conditions.
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Abstract
The present invention relates to elongase genes, their polypeptides and their control regions, and the use of such genes, polypeptides and control regions in determining compositions for use in the treatment of disease. The identified compositions regulate the expression of the elongase genes or modulate the activity of their protein products. The nucleotide and amino acid sequences are taught for ELG4, ELG6 and ELG7. The control sequences and function are taught for ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7.
42 Citations
115 Claims
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1. An isolated polynucleotide sequence, comprising a polynucleotide sequence which is selected from the group consisting of:
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(a) a sequence comprising SEQ ID NO;
4;
(b) a sequence comprising SEQ ID NO;
8;
(c) a sequence comprising SEQ ID NO;
11;
(d) a sequence which is at least 80% homologous with a sequence of any of (a) to (c);
(e) a sequence which is at least 90% homologous with a sequence of any of (a) to (c);
(f) a sequence which is at least 95% homologous with a sequence of any of (a) to (c);
(g) a sequence which is at least 98% homologous with a sequence of any of (a) to (c);
(h) a sequence which is at least 99% homologous with a sequence of any of (a) to (c); and
;
(i) a sequence which hybridizes to any of (a) to (h) under stringent conditions. - View Dependent Claims (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 36, 37, 38, 39, 40, 41, 42, 43, 94, 96, 97, 98, 99, 100, 107, 108, 109, 110, 111, 112, 113, 114, 115)
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14. An isolated polypeptide comprising an isolated polypeptide selected from the group consisting of:
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(a) a sequence comprising SEQ ID NO;
5;
(b) a sequence comprising SEQ ID NO;
9;
(c) a sequence comprising SEQ ID NO;
12;
(d) a sequence which is at least 80% homologous with a sequence of any of (a) to (c);
(e) a sequence which is at least 90% homologous with a sequence of any of (a) to (c);
(f) a sequence which is at least 95% homologous with a sequence of any of (a) to (c);
(g) a sequence which is at least 98% homologous with a sequence of any of (a) to (c); and
(h) a sequence which is at least 99% homologous with a sequence of any of (a) to (c). - View Dependent Claims (15, 16, 17, 18, 19, 20, 21, 22, 44, 45, 46, 90, 92, 93)
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23. An isolated polynucleotide sequence, comprising a polynucleotide sequence which is selected from the group consisting of:
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(a) a sequence comprising SEQ ID NO;
1;
(b) a sequence comprising SEQ ID NO;
2;
(c) a sequence comprising SEQ ID NO;
3;
(d) a sequence comprising SEQ ID NO;
6;
(e) a sequence comprising SEQ ID NO;
7;
(f) a sequence comprising SEQ ID NO;
10;
(g) a sequence comprising SEQ ID NO;
13;
(h) a sequence which is at least 80% homologous with a sequence of any of (a) to (g);
(i) a sequence which is at least 90% homologous with a sequence of any of (a) to (g);
(j) a sequence which is at least 95% homologous with a sequence of any of (a) to (g);
(k) a sequence which is at least 98% homologous with a sequence of any of (a) to (g);
(l) a sequence which is at least 99% homologous with a sequence of any of (a) to (g); and
;
(m) a sequence which hybridizes to any of (a) to (l) under stringent conditions. - View Dependent Claims (24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35)
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47. A method for identifying a compound which modulates a PUFA disorder, comprising identifying a compound which modulates the activity of a polynucleotide, wherein the polynucleotide is a coding sequence selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7, comprising the steps of:
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(a) selecting a control animal having said polynucleotide and a test animal having said polynucleotide;
(b) treating said test animal using a compound; and
,(c) detenrmining the relative quantity of an expression product of said polynucleotide, as between said control animal and said test animal. - View Dependent Claims (48, 49)
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50. A method for identifyring a compound which modulates a PUFA disorder, comprising identifying a compound which modulates the activity of a polynucleotide, wherein the polyncleotide is acoding sequence selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7, comprising the steps of:
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(a) selectingahost cell having said polynucleotide, wherein said host cell is heterologous to said polynucleotide;
(b) cloning said host cell and separating said clones in to a test group and a control group;
(c) treating said test group using a compound; and
(d) determining the relative quantity of an expression product of said polynucleotide, as between said test group and said control group.
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51. A method for identifying a compound which modulates a PUFA disorder, comprising identifying a compound which modulates the activity of a polynucleotide, wherein the polynucleotide is a coding sequence selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7, comprising the steps of:
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(a) selecting a test group having a host cell with said polynucleotide or a portion of said host cell, and selecting a suitable control group;
(b) treating said test group using a compound; and
(c) determining the relative quantity or relative activity of a product of said polynucleotide or of the said polyiiucleotide, as between said test group and said control group.
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52. A method for identifyig a compound modulates a PUFA disorder, comprising identifying a compound which modulates the activity of a polypeptide selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7, comprising the steps of:
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(a) selecting a control animal having said polypeptide and a test animal having said polypeptide;
(b) treating said test animal using a compound;
(c) determining the relative quantity or relative activity of an expression product of said polypeptide or of the said polypeptide, as between said control animal and said test animal. - View Dependent Claims (53, 54)
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55. A method for identifying a compound which modulates a PUFA disorder, comprising identifying a compound which modulates the activity of a polypeptide selected from the group consisting of ELG 1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7, comprising the steps of:
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(a) selecting a host cell comprising said polypeptide wherein said host cell is heterologous to said polypeptide;
(b) cloning said hostcell and sepirating said clones into a test group and a control group;
(c) treating said test group using a compound; and
(d) determining the relative quantity or relative activity of an expression product of said polypeptide or of the said polypeptide, as between said test group and said control group.
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56. A method for identifying a compound which modulates a PUFA disorder, comprising identifying a compound which modulates the activity of a polypeptide selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7, comprising the steps of:
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(a) selecting a test group having a host cell with said polynucleotide or a portion of said host cell, and selecting a suitable control group;
(b) treating said test group using a compound; and
(c) determining the relative quantity or relative activity of a product of said polypeptide or of the said polypeptide, as between said test group and said control group.
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57. A method for identifying a compound which modulates the activity of a polynucleotide, wherein the polynucleotide is a control region of a gene selected from the group consisting of ELG1, ELG2, ELG3, ELG4,ELG5, ELG6 and ELG7, comprising the steps of:
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(a) selecting a control animal having said polynucleotide and a test animal having said polynucleotide;
(b) treating said test animal using a compound; and
,(c) determining the relative quantity of an expression product of an operably linked polynucleotide to said polynucleotide, as between said control animal and said test animal. - View Dependent Claims (58, 59)
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60. A method for identifying a compound which modulates the activity of a polynucleotide, wherein the polynucleotide is a control region of a gene selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7, comprising the steps of:
-
(a) selecting a host cell comprising said polynucleotide, wherein said host cell is heterologous to said polynucleotide;
(b) cloning said host cell and separating said clones into a test group and a control group;
(c) treating said test group using a compound; and
(d) determining the relative quantity of an expression product of an operably linked polyriucleotide to said polynucleonde, as between said test group and said control group.
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61. A method for identifying a compound which modulates the activity of a polynucleotide, wherein the polynucleotide is a control region of a gene selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7, comprising the steps of:
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(a) selecting a test group having a host cell with said polynucleotide or a portion of said host cell, and selecting a suitable control group;
(b) treating said test group using a compound; and
(c) determining the relative quantity of an expression product of an operably linked polynucleotide to said polynucleotide, as between said test group and said control group.
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- 62. A composition for treating a PUFA disorder comprising a compound which modulates a polynucleotide from the coding sequence selected from the grpup consisting of ELG1, ELG2, ELG3, ELG4, ELGS, ELG6, and ELG7, and a pharmaceutically acceptable carrier.
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63. A composition for treating a PUFA disorder comprising a compound which modulates a polypeptide selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6, and ELG7, and a pharmaceutically acceptable carrier.
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64. A composition for treating a PUFA disorder comprising a compound which modulates a polynucleotide from the control region selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6, and ELG7, and a pharmaceutically acceptable carrier.
- 69. A method for diagnosing the presence of or a predisposition for a PUFA disorder in a subject by detecting a germline alteration in a polynucleotide representing .the coding sequence selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6, and ELG7, from said subject, comprising comparing the germline sequence of said polynucleotide from a tissue sample from said subject with the germline sequence of a wild-type of said polynucleotide, wherein an alteration in the germline sequence of said subject indicates the presence of or a predisposition to said PUFA disorder.
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70. A method for diagnosing the presence of or a predisposition for a PUFA disorder in a subject by detecting a germline alteration in a polynucleotide representing the control region selected from the group consisting of ELG1, ELG2, ELG3 and ELG5 in said subject, comprising comparing the gerinline sequence of said polynucleotide from a tissue sample from said subject with the germline sequence of a wild-type of said polynucleotide, wherein an alteration in the germline sequence of said subject indicates the presence of or a predisposition to said PUFA disorder.
- 73. A method for diagnosing the presence of or a predisposition for a PUFA disorder in a subject, comprising comparing the sequence of a polypeptide selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6, and ELG7, from said subject with the sequence of a wild-type of said polypeptide, wherein an alteration in the sequence of said subject as compared to said wild-type indicates the presence of or a predisposition to said PUFA disorder.
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76. A method for identifying a compound which inhibits or promotes the overall activity of two or more polynucleotides, wherein the polynucleotides are control regions of two or more different genes selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7, comprising the steps of:
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(a) selecting a host cell having said polynucleotides, wherein said host cell is heterologous to said polynucleotides;
(b) cloning said host cell and separating said clones into a test group and a control group;
(c) treating said test group using a compound; and
(d) determining the relative quantities of expression products of operably linked polynucleotides to said poly ucleotides, as between said test group and said control group.
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77. A method for Identifying a compound which inhibits or promotes the overall activity of two or more polynucleotides, wherein the polynucleotides are from control regions of said polynucleotides, selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7, comprising the steps of:
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(a) selecting a test group having a host cell with said polynucleotide or a portion of said host cell, and selecting a suitable control group;
(b) treating said test group using a compound; and
(c) determining the relative quantities of expression products of operably linked polynucleotides to said polynucleotides, as between said test group and said control group.
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78. A method for identifying a compound which inhibits or promotes the activity of two or more polynucleotides, wherein the polynucleotides are coding sequences selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELGS, ELG6 and ELG7, operably associated with promoter regions, wherein the promoter regions are effective to initiate, terminate or
(a) selecting a host cell having said polynucleotides, wherein said host cell are heterologous to said polynucleotides; -
(b) cloning said host cell and separating said clones into a test group and a control group;
(c) treating said test group using a compound; and
(d) determining the relative quantity or relative activity of an expression product of said polynucleotide, as between said test group and said control group.
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79. A method for identifying a compound which inhibits or promotes the activity of two or more polynucleotides, wherein the polynucleotides are coding sequences selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7, operably associated with promoter regions, wherein the promoter regions are effective to initiate, terminate or regulate the level of expression of the nucleic acid sequence, comprising the steps of:
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(a) selecting a test group having a host cell with said polynucleotide or a portion of said host cell, and selecting a suitable control group;
(b) treating said test group using a compound; and
(c) determining the relative quantity or relative activity of an expression product of said polynucleotide, as between said test group and said control group.
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80. A method for identifying a compound which inhibits or promotes the activity of a mammalian delta-5-desaturasenzyme and one or more enzymes selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6, or ELG7, within the same host system, comprising the steps of:
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(a) providing a host system containing nucleic acid sequences which encode for a mammalian delta-5-desaturase and one or more mammnualian elongase enzymes selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 or ELG7, operably associated with promoter regions, wherein the promoter regions are effective to initiate, terminate or regulate the level of expression of the nucleic acid sequence;
(b) contacting the host system with a test component;
(c) simultaneously evaluating the enzymatic activities of the delta-5-desaturase and the elongase enzymes, wherein a measurable difference in a level of lipid metabolites or associated cofactors in the presence of the test component compared to a control under identical conditions but in the absence of the test component is an indicator of the ability of the test component to modulate delta-5-desaturase and/or elongase enzyme activity; and
(d) identifying as said compound a test component which exhibits said ability.
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81. A method for identifyjng a compound which inhibitsr promotes the activity of a mammalian delta-6-desaturase enzyme and one or more enzymes selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 or ELG7, within the same host system, comprising the steps of:
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(a) providing a host system containing nucleic acid sequences which encode for a mammalian delta-6-desaturase and one or more manunalian elongase enzymes selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 or ELG7, operably associated with promoter regions, wherein the promoter regions are effective to initiate, terminate or regulate the level of expression of the nucleic acid sequence;
(b) contacting the host system with a test component;
(c) simultaneously evaluating the enzymatic activities of the delta-6-desaturase and the elongase enzymes, wherein a measurable difference in a level of lipid metabolites or associated cofactors in the presence of the test component compared to a control under identical conditions but in the absence of the test component is an indicator of the ability of the test component to modulate delta-6-desaturase and/or elongase enzyme activity; and
(d) identifying as said compound a test component which exhibits said ability.
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82. A method for identifying a compound which inhibits or promotes the activity of a mammalian delta-5- and delta-6-desaturase enzyme and/or one or more enzymes selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 or ELG7, within the same host system, comprising the steps of:
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(a) providing a host system containing nucleic acid sequences which encode simultaneously for a mammalian delta-5-desaturase, a mammalian delta-6-desaturase and one or more mammalian elongase enzymes selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 or ELG7, operably associated with promoter regions, wherein the promoter regions are effective to initiate, terminate or regulate the level of expression of the nucleic acid sequence;
(b) contacting the host system with a test component;
(c) simultaneously evaluating the enzymatic activities of the delta-5-desaturase, the delta-6-desaturase and the elongase enzymes, wherein a measurable difference in a level of lipid metabolites or associated cofactors in the presence of the test component compared to a control under identical conditions but in the absence of the test component is an indicator of the ability of the test component to modulate delta-5- and/or delta-6-desaturase and/or elongase enzyme activity; and
(d) identifying as said compound a test component which exhibits said ability.
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- 83. A cpition for treating a PUFA disorder comprising a compound which modulates two or more human polynucleotides from control regions selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6, ELG7, delta-5-desaturase, delta-6-desaturase and a pharmaceutically acceptable carrier.
- 87. A method for detecting the presence of or the predisposition for a PUFA disorder, said method comprising determining the level of expression of two or more expression products of genes selected from the group onsisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6, ELG7, delta-5-desaturase, delta-6-desaturase, in a subject relative to a predetermined control level of expression, wherein any modified expression of said expression products as compared to said control is indicative of the presence of or the predisposition for a PUFA disorder.
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91. An antibody immunoreactive with an elongase polypeptide selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7, or an immunogenic portion thereof.
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101. A method for diagnosing the presence of or a predisposition for a PUFA disorder in a subject by detecting alterations as compared to wild-type in the elongation of PUFA in a peripheral blood leukocyte obtained from said subject.
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102. A method for monitoring the development of a PUFA disorder in a subject by detecting alterations as compared to previous samples in the elongation of PUFA in a peripheral blood leukocyte obtained from said subjects.
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103. A method for assessing the efficacy of test compounds on a PUFA disorder in a subject by assessing alterations as compared to previous samples in the elongation of PUFA in a peripheral blood leukocyte obtained from said subject.
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104. The use of pebulate sulphoxide for the treatment of a disease selected from the group consisting of eczema, cardiovascular, inflammation, Sjö
- gren'"'"'s syndrome, gastrointestinal disorders, viral diseases and postviral fatigue, body weight disorders, psychiatric disorders, cancer, cystic fibrosis, endometriosis, pre-menstrual syndrome, alcoholism, congenital liver disease, Alzheimer'"'"'s syndrome, hypercholesterolemia, autoimmune disorders, atopic disorders, acute respiratory distress syndrome, articular cartilage degradation, diabetes and diabetic complications.
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105. A method for idenitiying a compound which modulates a biological activity of a polypeptide selected from the group consisting of ELG1, ELG2, ELG3, ELG4, ELG5, ELG6 and ELG7, comprising the steps of:
- (a) providing an assay which measures a biological activity of the selected polypeptide;
(b) treating the assay with a compound; and
(c) identifying a change in the biological activity of the selected polypeptide, wherein a difference between the treated assay and a control assay identifies the compound as modulator of the polypeptide. - View Dependent Claims (106)
- (a) providing an assay which measures a biological activity of the selected polypeptide;
Specification