Afinity biosensor for monitoring biological process

• US 20040186359A1
• Filed: 01/09/2004
• Published: 09/23/2004
• Est. Priority Date: 07/09/2001
• Status: Abandoned Application

• Current Assignee: Mayo Foundation For Medical Education And Research (Mayo Clinic), Arizona Board of Regents (University of Arizona)
• Original Assignee: Arizona Board of Regents (University of Arizona)
• Inventors: Panitch, Alyssa, Booksh, Karl S., Khairallah, Philip A., Beaudoin, Stephen P., Loutfi, Hassan
• Application Number:
  US10/483,586
• Publication Number:
  US 20040186359A1
• Time in Patent Office: Days
• US Class Current: 600/310
• CPC Class Codes: A61B 2562/02 Details of sensors specially adapted for in-vivo measurements
• CPC Class Codes: A61B 5/0075 by spectroscopy, i.e. measuring spectra, e.g. Raman spectroscopy, infrared absorption spectroscopy A61B5/0071 takes precedence
• CPC Class Codes: A61B 5/0084 for introduction into the body, e.g. by catheters A61B5/1459 takes precedence
• CPC Class Codes: A61B 5/0091 for mammography
• CPC Class Codes: A61B 5/02 Detecting, measuring or recording pulse, heart rate, blood pressure or blood flow; Combined pulse/heart-rate/blood pressure determination; Evaluating a cardiovascular condition not otherwise provided for, e.g. using combinations of techniques provided for in this group with electrocardiography or electroauscultation; Heart catheters for measuring blood pressure
• CPC Class Codes: A61B 5/4312 Breast evaluation or disorder diagnosis A61B5/0091 takes precedence
• CPC Class Codes: G01N 21/553 and using surface plasmons fluorescence excitation G01N21/648; enhanced Raman G01N21/658
• CPC Class Codes: G01N 21/7703 using reagent-clad optical fibres or optical waveguides using measurement of total internal reflection or attenuated total reflection G01N21/552; optical fibres or waveguides per se G02B
• CPC Class Codes: G01N 33/54373 involving physiochemical end-point determination, e.g. wave-guides, FETS, gratings
• CPC Class Codes: G01N 33/57415 of breast
• CPC Class Codes: G01N 33/6887 from muscle, cartilage or connective tissue

Abstract

An optical biosensor carries one or more affinity legends or binding members that bind specifically to a marker being monitored. Light directed along optic fibers illuminates a surface plasmon resonance (SPRN) probe surface on which is immobilized the binding member. A spectrophotometer receives light reflected back along the fiber optic path and provides wavelength information indicative of the absence or presence of surface plasmon resonance indicative of the bound marker in known SPR manner. The probe is used in vitro or in vivo. When used in vivo the fiberoptic light path comprises a catheter that directs the probe to an implant site. For in vivo implantation a housing houses the probe at the implant site and is adapted to filter out larger particles that would adversely affect with the spectral analysis. In one embodiment the probe has two regions on its surface. The first region has no immobilized binding member. The second region does have the binding member immobilized on it. Light returned from the first and second regions can be compared. The presence or absence of a marker bound by the binding member on the second surface is apparent in the similarity or dissimilarity of the spectral information returned from the two regions. The probe can monitor blood, spinal fluid, mucus membrane, wound tissue, implanted organs, urine and other substances for the presence of a marker which may be indicative of a medical condition in an animal or human subject.

Claims

1. An optical fiber surface plasmon resonance (SPR) biosensor for observation of a biological marker in a biological fluid wherein said biological marker is a first member of a binding pair, and said biosensor comprises:

a. an SPR probe surface having immobilized thereon a second member of said binding pair;

b. a spectrophotometric means for receiving a first signal from said probe surface and a second signal from said implanted probe surface, said second signal being received at a time after binding of said first and second members of said binding pair on said probe surface; and

c. means for comparing properties of said first received signal and said second received signal to determine the presence of said biological marker.

2. The biosensor of claim 1, wherein said optical fiber probe surface comprises dextran as immobilization agent for said first member of said binding pair.

3. The biosensor of claim 1, wherein said probe surface comprises polyethyleneglycol as anti-fouling agent.

4. The biosensor of claim 1, for in vivo observation of a biological marker in a tissue in an individual wherein said SPR probe surface is implantable in said individual and said biosensor comprises in addition a housing for said probe surface, said housing being capable of excluding particulate components of said fluid and thereby preventing fouling, inflammatory response and non-specific binding of said components to said probe surface.

7. The biosensor of claim 2, wherein said SPR probe surface is implanted through a catheter into said individual.

8. The biosensor of claim 2, in which said optical fiber is of a width of less than 1 micron to about 200 microns.

9. The biosensor of claim 8, wherein the width of said optical fiber is about 10 microns to 100 microns.

10. The biosensor of claim 1, in which said binding pair is an antigen and antibody binding pair, nucleotide and anti-nucleotide binding pair, enzyme and receptor binding pair, carbohydrate and lectin binding pair, or a pharmacological analytes and polymer binding pair.

11. The biosensor of claim 10, in which said antigen is a protein peptide, carbohydrate, drug or other chemical compound and said antibody is capable of binding specifically and with high affinity to said antigen.

12. The biosensor of claim 1, in which said biological marker is a protein, peptide, RNA, DNA or carbohydrate.

13. The biosensor of claim 4, for detecting myocardial infarction in an individual in which the first member of said binding pair CtNT, CtnI, CRP, CK-MB or myoglobin and said second member of said binding pair is antibody capable of binding specifically to said first member.

14. The biosensor of claim 1, wherein said received signals are wavelengths of minimum reflectance.

15. The biosensor of claim 1, wherein said optical probe comprises multimode optical fibers.

16. The biosensor of claim 1, wherein said optical probe comprises self-referencing optical sensors.

17. The biosensor of claim 2, wherein said received signals are wavelengths of minimum reflectance.

18. The biosensor of claim 2, wherein said optical probe comprises multimode optical fibers.

19. The biosensor of claim 2, wherein said optical probe comprises self-referencing optical sensors.

20. The biosensor of claim 19, wherein said self-referencing optical sensor comprises a beveled tip.

21. The biosensor of claim 19, wherein said self-referencing optical sensor comprises spatially separated sensing areas.

22. The biosensor of claim 1, wherein said fluid is blood, cerebrospinal fluid, mucous membrane, wound tissue, implanted organs, nervous tissue and associated fluids or urine.

23. A system for detecting a biological molecule in a fluid comprising the biosensor of claim 1, and comprising in addition a spectrophotometer for determining the wavelength of minimum reflectance from each said probe surfaces and a means for calculating differences between said wavelengths.

24. An in vitro method for detecting a biological molecule in a tissue matrix and associated fluid from an individual comprising the steps of:

a. contacting the biosensor of claim 1, with said tissue or associated fluid;

b. spectrophotometrically receiving said first signal;

c. spectrophotometrically receiving said second signal;

d. calculating differences between said received signals; and

e. comparing said calculated differences to signals received from a standard tissue containing said biological molecule to determine the presence of said biological molecule.

25. An in vivo method for detecting a biological molecule in a tissue matrix and associated fluid in an individual comprising the steps of:

a. implanting the biosensor of claim 2, at a selected site in said tissue;

b. spectrophotometrically receiving said first signal;

c. spectrophotometrically receiving said second signal;

d. calculating differences between said received signals; and

e. comparing said calculated differences to signals received from a standard tissue containing said biological molecule to determine the presence of said biological molecule.

26. The method of claim 25, wherein said received signals are wavelengths of minimum reflectance.

27. The method of claim 25, wherein said tissue matrix and associated fluid is blood, urine, cerebrospinal fluid, mucous membrane, wound tissue, or implanted organs and associated fluids.

28. A method of claim 25, for detecting myocardial infarction in an individual wherein said biosensor comprises a probe surface having immobilized thereon antibodies capable of binding specifically to a member of the group comprising cardiac troponin T (cTnT), cardiac troponin I (cTnI), C-reactive protein (CRP), creatinine kinase, myocardial band (CK-MB), and cardiac myoglobin (myoglobin).

29. The method of claim 25, for continuous in vivo monitoring of said individual wherein said probe surface is inserted intravenously into said individual and measurements are repeated over a period of time.

30. The method of claim 25, for screening an individual for the presence of breast cancer wherein said biosensor comprises a probe surface having immobilized thereon antibodies capable of binding specifically to a member of the group comprising CA 15-3 and CA 27-29.

31. A method for quantifying the amount of a biological molecule in vivo in an individual comprising the method of claim 25, and comprising in addition the step of comparing the observed properties of said signals to signals received from a biological solution or tissue and associated fluid having a known concentration of said biological molecule.

32. The method of claim 25, for continuous in situ observation of said biological marker over a determined period of time wherein said biosensor is allowed to remain in situ and said signals are repeatedly received over said period of time.

33. The method of claim 32, for monitoring therapy of a medical condition wherein the presence of said biological marker changes over a period of time in response to said therapy.

34. The method of claim 33, comprising in addition a means for delivering a chemical agent to said in situ site in response to a signal from said biosensor.

5. A biocompatible screen for housing an implanted medial device in an individual, comprising an elastomeric screen formed by a lithographic process, said screen having penetrating holes of between 1 and 50 microns in diameter.

6. The screen of claim 5, wherein said medical device is a fiber optic biosensor or a catheter.

35. A method of monitoring a human or animal subject for the presence or absence of a marker indicative of the presence or absence of a medical condition comprising:

a. providing an SPR probe having a first surface with a binding member adherent thereto, the binding member being effective to bind to the marker;

b. providing an optical path to the first surface;

c. locating the probe at a location of interest in or on the subject;

d. directing light to the first surface along the optical path;

e. observing the light retrieved from the probe for spectral indications of the presence or absence of the marker.

36. A method of monitoring according to claim 35, wherein step a) comprises providing a housing for the probe, including providing a filtering housing surface adapted to filter out particles to avoid interference by such particles in the spectral indication of the presence or absence of the marker.

37. A method of monitoring according to claim 35, wherein step b) comprises providing a catheter, the catheter comprising an optical fiber path, and step c) comprises intravenously moving the probe into place with the catheter.