Parallel or antiparallel, homologous or complementary binding of nucleic acids or analogues thereof to form duplex, triplex or quadruplex complexes
First Claim
1. A complex comprising:
- a probe containing a heteropolymeric probe sequence of nucleic acids or nucleic acid analogues; and
a target containing a heteropolymeric target sequence of nucleic acids or nucleic acid analogues, wherein;
(a) at least one of said probe and said target is purified or synthetic; and
(b) said heteropolymeric probe sequence is bonded to said heteropolymeric target sequence by Watson-Crick complementary base interaction or by homologous base interaction, provided that when said complex is a duplex and said heteropolymeric probe sequence is antiparallel to said heteropolymeric target sequence, said heteropolymeric probe sequence is bonded to said heteropolymeric target sequence by homologous base interaction, and provided that when said complex is a triplex, said complex is free of recombination proteins.
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Abstract
A complex includes: (1) a probe containing a heteropolymeric probe sequence of nucleic acids or nucleic acid analogues; and (2) a target containing a heteropolymeric target sequence of nucleic acids or nucleic acid analogues, wherein: (a) at least one of the probe and the target is purified or synthetic; and (b) the heteropolymeric probe sequence is bonded to the heteropolymeric target sequence by Watson-Crick complementary base interaction or by homologous base interaction, provided that when the complex is a duplex and the heteropolymeric probe sequence is antiparallel to the heteropolymeric target sequence, the heteropolymeric probe sequence is bonded to the heteropolymeric target sequence by homologous base interaction, and provided that when the complex is a triplex, the complex is free of recombination proteins. A method for assaying a target includes detecting formation of the complex.
15 Citations
43 Claims
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1. A complex comprising:
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a probe containing a heteropolymeric probe sequence of nucleic acids or nucleic acid analogues; and
a target containing a heteropolymeric target sequence of nucleic acids or nucleic acid analogues, wherein;
(a) at least one of said probe and said target is purified or synthetic; and
(b) said heteropolymeric probe sequence is bonded to said heteropolymeric target sequence by Watson-Crick complementary base interaction or by homologous base interaction, provided that when said complex is a duplex and said heteropolymeric probe sequence is antiparallel to said heteropolymeric target sequence, said heteropolymeric probe sequence is bonded to said heteropolymeric target sequence by homologous base interaction, and provided that when said complex is a triplex, said complex is free of recombination proteins. - View Dependent Claims (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42)
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43. An isolated or synthetic probe comprising:
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a loop containing nucleic acids or nucleic acid analogues;
a stem adjacent to the loop, and containing at least two strands of nucleic acids or nucleic acid analogues; and
a heteropolymeric probe sequence located entirely or partially within the loop, and containing a double or triple-stranded sequence of nucleic acids or nucleic acid analogues, wherein the at least two strands of the stem are adapted to be bound to each other in the absence of the heteropolymeric target sequence binding to the heteropolymeric probe sequence, and the at least two strands are adapted to separate from each other and open the loop when a heteropolymeric target sequence binds to the heteropolymeric probe sequence.
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Specification