Humanized antibodies that recognize beta amyloid peptide
First Claim
Patent Images
1. A humanized immunoglobulin light chain comprising (i) variable region complementarity determining regions (CDRs) from the 12A11 immunoglobulin light chain variable region sequence set forth as SEQ ID NO:
- 2, and (ii) a variable framework region from a human acceptor immunoglobulin light chain sequence.
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Abstract
The invention provides improved agents and methods for treatment of diseases associated with amyloid deposits of Aβ in the brain of a patient. Preferred agents include antibodies, e.g., humanized antibodies.
197 Citations
124 Claims
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1. A humanized immunoglobulin light chain comprising (i) variable region complementarity determining regions (CDRs) from the 12A11 immunoglobulin light chain variable region sequence set forth as SEQ ID NO:
- 2, and (ii) a variable framework region from a human acceptor immunoglobulin light chain sequence.
- View Dependent Claims (24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 45, 46, 47, 48, 49, 66, 68, 71, 72, 73, 74, 75, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111)
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2. A humanized immunoglobulin light chain comprising (i) variable region complementarity determining regions (CDRs) from the 12A11 immunoglobulin light chain variable region sequence set forth as SEQ ID NO:
- 2, and (ii) a variable framework region from a human acceptor immunoglobulin light chain sequence, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 12A11 light chain variable region sequence, wherein the framework residue is selected from the group consisting of;
(a) a residue that non-covalently binds antigen directly;
(b) a residue adjacent to a CDR;
(c) a CDR-interacting residue; and
(d) a residue participating in the VL-VH interface. - View Dependent Claims (5, 6, 7)
- 2, and (ii) a variable framework region from a human acceptor immunoglobulin light chain sequence, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 12A11 light chain variable region sequence, wherein the framework residue is selected from the group consisting of;
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3. A humanized immunoglobulin heavy chain comprising (i) variable region complementarity determining regions (CDRs) from the 12A11 immunoglobulin heavy chain variable region sequence set forth as SEQ ID NO:
- 4, and (ii) a variable framework region from a human acceptor immunoglobulin heavy chain
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4. A humanized immunoglobulin heavy chain comprising (i) variable region complementarity determining regions (CDRs) from the 12A11 immunoglobulin heavy chain variable region sequence set forth as SEQ ID NO:
- 4, and (ii) a variable framework region from a human acceptor immunoglobulin heavy chain, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 12A11 heavy chain variable region sequence, wherein the framework residue is selected from the group consisting of
(a) a residue that non-covalently binds antigen directly;
(b) a residue adjacent to a CDR;
(c) a CDR-interacting residue; and
(d) a residue participating in the VL-VH interface. - View Dependent Claims (8, 9, 10, 67)
- 4, and (ii) a variable framework region from a human acceptor immunoglobulin heavy chain, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 12A11 heavy chain variable region sequence, wherein the framework residue is selected from the group consisting of
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11. A humanized immunoglobulin light chain comprising (i) variable region complementarity determining regions (CDRs) from the 12A11 immunoglobulin light chain variable region sequence set forth as SEQ ID NO:
- 2, and (ii) a variable framework region from a human acceptor immunoglobulin light chain sequence, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 12A11 light chain variable region sequence, wherein the framework residue is a residue capable of affecting light chain variable region conformation or function as identified by analysis of a three-dimensional model of the 12A11 immunoglobulin light chain variable region.
- View Dependent Claims (13, 15, 18, 19, 20)
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12. A humanized immunoglobulin heavy chain comprising (i) variable region complementarity determining regions (CDRs) from the 12A11 immunoglobulin heavy chain variable region sequence set forth as SEQ ID NO:
- 4, and (ii) a variable framework region from a human acceptor immunoglobulin heavy chain, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 12A11 heavy chain variable region sequence, wherein the framework residue is a residue capable of affecting heavy chain variable region conformation or function as identified by analysis of a three-dimensional model of the 12A11 immunoglobulin heavy chain variable region.
- View Dependent Claims (14, 16, 17, 21, 22, 23, 69)
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34. A humanized immunoglobulin comprising a humanized heavy chain and a humanized light chain, wherein
(a) the humanized light chain comprises three complementarity determining regions (CDR1, CDR2 and CDR3) having amino acid sequences from the corresponding complementarily determining regions of the mouse 12A11 immunoglobulin light chain variable domain designated SEQ ID NO: - 2, and a variable region framework from a human light chain variable region framework sequence provided that at least one framework residue selected from the group consisting of a canonical residue, a vernier residue, a packing residue and a rare residue, is occupied by the same amino acid residue present in the equivalent position of the mouse 12A11 immunoglobulin light chain variable region framework; and
(b) the humanized heavy chain comprises three complementarity determining regions (CDR1, CDR2 and CDR3) having amino acid sequences from the corresponding complementarity determining regions of the mouse 12A11 immunoglobulin heavy chain variable domain designated SEQ ID NO;
4, and a variable region framework from a human heavy chain variable region framework sequence provided that at least one framework residue selected from a second group consisting of a canonical residue, a vernier residue, a packing residue and a rare residue, is occupied by the same amino acid residue present in the equivalent position of the mouse 12A11 immunoglobulin heavy chain variable region framework;
wherein the humanized immunoglobulin specifically binds to beta amyloid peptide (“
Aβ
”
) with a binding affinity of at least 10−
7 M, wherein the 12A11 immunoglobulin has the light chain with a variable domain designated SEQ ID NO;
2 and the heavy chain with a variable domain designated SEQ ID NO;
4. - View Dependent Claims (35, 36, 37, 38, 39)
- 2, and a variable region framework from a human light chain variable region framework sequence provided that at least one framework residue selected from the group consisting of a canonical residue, a vernier residue, a packing residue and a rare residue, is occupied by the same amino acid residue present in the equivalent position of the mouse 12A11 immunoglobulin light chain variable region framework; and
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40. A humanized antibody comprising the complementarity determining regions (CDR1, CDR2 and CDR3) of the 12A11 variable light chain sequence set forth as SEQ ID NO:
- 2.
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41. A humanized antibody comprising the complementarity determining regions (CDR1, CDR2 and CDR3) of the 12A11 variable heavy chain sequence set forth as SEQ ID NO:
- 4.
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42. A humanized antibody, or antigen-binding fragment thereof, which specifically binds to beta amyloid peptide (Aβ
- ), comprising a variable region comprising complementarity determining regions (CDRs) corresponding to CDRs from the mouse 12A11 antibody.
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43. A humanized immunoglobulin having the variable light chain amino acid sequence set forth as SEQ ID NO:
- 6 and having a variable heavy chain amino acid sequence selected from the group consisting of SEQ ID NO;
8, SEQ ID NO;
9 and SEQ ID NO;
10.
- 6 and having a variable heavy chain amino acid sequence selected from the group consisting of SEQ ID NO;
-
44. A chimeric immunoglobulin comprising variable region sequence substantially as set forth in SEQ ID NO:
- 2 or SEQ ID NO;
4, and constant region sequences from a human immunoglobulin.
- 2 or SEQ ID NO;
-
50. An isolated polypeptide comprising a fragment of SEQ ID NO:
- 2 selected from the group consisting of amino acids 43-58 of SEQ ID NO;
2, amino acids 74-80 of SEQ ID NO;
2 and amino acids 113-121 of SEQ ID NO;
2.
- 2 selected from the group consisting of amino acids 43-58 of SEQ ID NO;
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51. An isolated polypeptide comprising amino acids 43-48 of SEQ ID NO:
- 2, amino acids 74-80 of SEQ ID NO;
2 and amino acids 113-121 of SEQ ID NO;
2.
- 2, amino acids 74-80 of SEQ ID NO;
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52. An isolated polypeptide comprising a fragment of SEQ ID NO:
- 4 selected from the group consisting of amino acids 50-56 of SEQ ID NO;
4, amino acids 71-86 of SEQ ID NO;
4 and amino acids 119-128 of SEQ ID NO;
4.
- 4 selected from the group consisting of amino acids 50-56 of SEQ ID NO;
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53. An isolated polypeptide comprising amino acids 50-56 of SEQ ID NO:
- 4, amino acids 71-86 of SEQ ID NO;
4 and amino acids 119-128 of SEQ ID NO;
4.
- 4, amino acids 71-86 of SEQ ID NO;
-
54. An isolated polypeptide comprising amino acids 1-131 of SEQ ID NO:
- 2.
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55. An isolated polypeptide comprising amino acids 1-139 of SEQ ID NO:
- 4.
- 56. An isolated polypeptide having at least 85% identity to amino acids 1-131 of SEQ ID NO:
-
57. An isolated polypeptide having at least 85% identity to amino acids 1-139 of SEQ ID NO:
- 4.
-
64. A variant of a polypeptide comprising the amino acid sequence of SEQ ID NO:
- 2, said variant comprising at least one conservative amino acid substitution, wherein the variant retains the ability to specifically bind beta amyloid peptide (Aβ
) with a binding affinity of at least 107 M−
1.
- 2, said variant comprising at least one conservative amino acid substitution, wherein the variant retains the ability to specifically bind beta amyloid peptide (Aβ
-
65. A variant of a polypeptide comprising the amino acid sequence of SEQ ID NO:
- 4, said variant comprising at least one conservative amino acid substitution, wherein the variant retains the ability to direct specific binding to beta amyloid peptide (Aβ
) with a binding affinity of at least 107 M−
1.
- 4, said variant comprising at least one conservative amino acid substitution, wherein the variant retains the ability to direct specific binding to beta amyloid peptide (Aβ
-
70. An isolated nucleic acid molecule comprising the nucleotide sequence of SEQ ID NO:
- 1 or 3.
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76. A method of producing an antibody or antibody fragment, comprising a fragment of SEQ ID NO:
- 2 selected from the group consisting of amino acids 43-58 of SEQ ID NO;
2, amino acids 74-80 of SEQ ID NO;
2 and amino acids 113-121 of SEQ ID NO;
2, said method comprising culturing a host cell comprising a nucleic acid molecule that encodes said antibody or antibody fragment under conditions such that the antibody or antibody fragment is produced, and isolating said antibody or antibody fragment from the host cell or culture.
- 2 selected from the group consisting of amino acids 43-58 of SEQ ID NO;
-
77. A method of producing an antibody or antibody fragment, comprising a fragment of SEQ ID NO:
- 4 selected from the group consisting of amino acids 50-56 of SEQ ID NO;
4, amino acids 71-86 of SEQ ID NO;
4 and amino acids 119-128 of SEQ ID NO;
4, said method comprising culturing a host cell comprising a nucleic acid molecule that encodes said antibody or antibody fragment, under conditions such that the antibody or antibody fragment is produced, and isolating said antibody or antibody fragment from the host cell or culture.
- 4 selected from the group consisting of amino acids 50-56 of SEQ ID NO;
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78. A method for identifying residues amenable to substitution in a humanized 12A11 immunoglobulin variable framework region, comprising modeling the three-dimensional structure of the 12A11 variable region based on a solved immunoglobulin structure and analyzing said model for residues capable of affecting 12A11 immunoglobulin variable region conformation or function, such that residues amenable to substitution are identified.
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79. Use of the variable region sequence set forth as SEQ ID NO:
- 2 or SEQ ID NO;
4, or any portion thereof, in producing a three-dimensional image of a 12A11 immunoglobulin, 12A11 immunoglobulin chain, or domain thereof.
- 2 or SEQ ID NO;
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80. A methods of imaging amyloid deposits in the brain of a patient comprising administering to the patient an agent that specifically binds to Aβ
- , and detecting the antibody bound to Aβ
. - View Dependent Claims (81, 82, 83)
- , and detecting the antibody bound to Aβ
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84. A method of treating an amyloidogenic disease comprising administering to a patient having said amyloidogenic disease, a nucleic acid molecule that encodes an immunoglobulin light chain comprising the CDRs of the amino acid sequence of SEQ ID NO:
- 2 and a nucleic acid molecule that encodes an immunoglobulin heavy chain that comprises the CDRs of the amino acid sequence of SEQ ID NO;
4, under conditions such that said immunoglobulin chains are expressed, such that a beneficial therapeutic response in said patient is generated.
- 2 and a nucleic acid molecule that encodes an immunoglobulin heavy chain that comprises the CDRs of the amino acid sequence of SEQ ID NO;
-
85. A method of treating an amyloidogenic disease comprising administering to a patient having said amyloidogenic disease, a nucleic acid molecule that encodes an immunoglobulin light chain comprising the amino acid sequence of SEQ ID NO:
- 7 and a nucleic acid molecule that encodes an immunoglobulin heavy chain that comprises the amino acid sequence of SEQ ID NO;
10 or the amino acid sequence of any one of SEQ ID NOs;
13-31, under conditions such that said immunoglobulin chains are expressed, such that a beneficial therapeutic response in said patient is generated.
- 7 and a nucleic acid molecule that encodes an immunoglobulin heavy chain that comprises the amino acid sequence of SEQ ID NO;
-
112. A method for reducing neuritic burden in a subject in need thereof comprising administering to the subject an effective dose of a humanized 12A11 antibody which binds to an epitope within amino acids 3-7 of beta amyloid peptide (Aβ
- ), wherein the antibody is of the IgG1 isotype.
- View Dependent Claims (113, 114)
-
115. A method for treating an amyloidogenic disease in a patient comprising administering to the patient an effective dose of a humanized 12A11 antibody capable of reducing beta amyloid peptide (Aβ
- ) burden and neuritic dystrophy in the patient, wherein the antibody binds to an epitope within amino acids 3-7 of Aβ and
is of the IgG1 isotype. - View Dependent Claims (116)
- ) burden and neuritic dystrophy in the patient, wherein the antibody binds to an epitope within amino acids 3-7 of Aβ and
-
117. A method for reducing beta amyloid peptide (Aβ
- ) burden and neuritic dystrophy in a mammal comprising administering to the mammal an effective dose of a humanized 12A11 antibody capable of reducing beta amyloid peptide (Aβ
) burden and neuritic dystrophy, wherein the antibody binds to an epitope within amino acids 3-7 of Aβ and
is of the IgG1 isotype. - View Dependent Claims (118, 119, 120)
- ) burden and neuritic dystrophy in a mammal comprising administering to the mammal an effective dose of a humanized 12A11 antibody capable of reducing beta amyloid peptide (Aβ
-
121. A therapeutic composition comprising a humanized 12A11 antibody of the IgG1 isotype which binds to an epitope within amino acids 3-7 of beta amyloid peptide (Aβ
- ), wherein the antibody is capable of reducing neuritic burden in a subject.
-
122. A method for treating an amyloidogenic disease in a patient comprising administering to the patient an effective dose of a humanized 12A11 antibody which binds to soluble beta amyloid peptide (Aβ
- ) and reduces neuritic dystrophy in the patient, wherein the antibody binds to an epitope within amino acids 3-7 of Aβ and
is of the IgG1 isotype. - View Dependent Claims (123)
- ) and reduces neuritic dystrophy in the patient, wherein the antibody binds to an epitope within amino acids 3-7 of Aβ and
-
124. A therapeutic composition comprising a humanized 12A11 antibody of the IgG1 isotype which binds to soluble beta amyloid peptide (Aβ
- ), wherein the antibody binds to an epitope within amino acids 3-7 of Aβ and
is capable of reducing neuritic burden in a subject.
- ), wherein the antibody binds to an epitope within amino acids 3-7 of Aβ and
Specification