Method for virtual endoscopic visualization of the colon by shape-scale signatures, centerlining, and computerized detection of masses

• US 20050152588A1
• Filed: 10/28/2004
• Published: 07/14/2005
• Est. Priority Date: 10/28/2003
• Status: Abandoned Application

• Current Assignee: University of Chicago
• Original Assignee: University of Chicago
• Inventors: Dachman, Abraham H., Nappi, Janne J., Frimmel, Hans, Yoshida, Hiroyuki
• Application Number:
  US10/974,699
• Publication Number:
  US 20050152588A1
• Time in Patent Office: Days
• US Class Current: 382/128
• CPC Class Codes: G06T 15/08 Volume rendering
• CPC Class Codes: G06T 19/20 Editing of 3D images, e.g. changing shapes or colours, aligning objects or positioning parts
• CPC Class Codes: G06T 2207/10081 Computed x-ray tomography [CT]
• CPC Class Codes: G06T 2207/30028 Colon; Small intestine
• CPC Class Codes: G06T 2207/30068 Mammography; Breast
• CPC Class Codes: G06T 2219/2012 Colour editing, changing, or manipulating; Use of colour codes
• CPC Class Codes: G06T 7/0012 Biomedical image inspection

Abstract

A visualization method and system for virtual endoscopic examination of CT colonographic data by use of shape-scale analysis. The method provides each colonic structure of interest with a unique color, thereby facilitating rapid diagnosis of the colon. Two shape features, called the local shape index and curvedness, are used for defining the shape-scale spectrum. The shape index and curvedness values within CT colonographic data are mapped to the shape-scale spectrum in which specific types of colonic structures are represented by unique characteristic signatures in the spectrum. The characteristic signatures of specific types of lesions can be determined by use of computer-simulated lesions or by use of clinical data sets subjected to a computerized detection scheme. The signatures are used for defining a 2-D color map by assignment of a unique color to each signature region.

Claims

1. A method of displaying volumetric image data of a target organ as a visual aid in detecting at least one abnormality in the target organ, comprising:

obtaining the volumetric image data of the target organ, the volumetric image data including a plurality of voxels having a respective plurality of image data values;

determining at least two geometric feature values at each voxel in the plurality of voxels based on the plurality of image data values;

determining a colormap by assigning a color to each possible combination of the at least two geometric feature values, wherein each assigned color corresponds to a different region type within the target organ;

determining a display color for each voxel in the plurality of voxels based on the determined colormap; and

displaying, based on the determined display color for each voxel in the plurality of voxels, a color image representing the volumetric image data of the target organ.

2. The method of claim 1, further comprising:

identifying the at least one abnormality based on the displayed color image.

3. The method of claim 1, wherein the step of determining the colormap comprises:

selecting a region type of the target organ;

determining combinations of the at least two geometric feature values that most frequently correspond to the selected region type; and

assigning a color to each of the determined combinations of the at least two geometric feature values that correspond to the selected region type.

4. The method of claim 3, wherein the step of determining the colormap comprises:

obtaining simulated volume data representing the target organ; and

determining, based on the simulated volume data, the at least two geometric feature values for each voxel in the simulated volume data.

5. The method of claim 3, wherein the step of determining the colormap comprises:

obtaining clinical volume data representing the target organ; and

determining, based on the clinical volume data, the at least two geometric feature values for each voxel in the clinical volume data.

6. The method of claim 3, further comprising:

repeating the steps of selecting a region type, determining combinations, and assigning the color for a plurality of region types of the target organ; and

assigning a color for each possible combination of the at least two geometric feature values not associated with the selected region types by interpolating the colors assigned to the selected region types.

7. The method of claim 1, wherein the step of determining the at least two geometric features comprises:

determining, based on the plurality of image data values, a first index at each voxel, the first index being indicative of a local shape at each respective voxel; and

determining, based on the plurality of image data values, a second index at each voxel, the second index being indicative of a local scale at each respective voxel.

8. The method of claim 7, wherein the step of determining the first index comprises:

determining a shape index at each voxel, the shape index being indicative of a local topology at each respective voxel.

9. The method of claim 7, wherein the step of determining the second index comprises:

determining a curvedness index at each voxel, the curvedness index being indicative of a magnitude of a local curvature at each respective voxel.

10. The method of claim 1, further comprising:

detecting an abnormality region in the target organ based on calculated feature values at each voxel in the plurality of voxels,

wherein the displaying step further comprises displaying the detected abnormality region in a predetermined color.

11. The method of claim 1, wherein the obtaining step comprises:

obtaining a set of cross-sectional images of the target organ;

obtaining a set of voxels representing a total scanned volume from the set of cross sectional images; and

performing segmentation to extract, from the set of voxels representing the total scanned volume, the plurality of voxels in the volumetric image data of the target organ.

12. A system for displaying volumetric image data of a target organ as a visual aid in detecting at least one abnormality in the target organ, comprising:

a mechanism for obtaining the volumetric image data of the target organ, the volumetric image data including a plurality of voxels having a respective plurality of image data values;

a mechanism for determining at least two geometric feature values at each voxel in the plurality of voxels based on the plurality of image data values;

a mechanism for determining a colormap by assigning a color to each possible combination of the at least two geometric feature values, wherein each assigned color corresponds to a different region type within the target organ;

a mechanism for determining a display color for each voxel in the plurality of voxels based on the determined colormap; and

a mechanism for displaying, based on the determined display color for each voxel in the plurality of voxels, a color image representing the volumetric image data of the target organ.

13. The system of claim 12, further comprising:

a mechanism for identifying the at least one abnormality based on the displayed color image.

14. The system of claim 12, wherein the mechanism for determining the colormap comprises:

a mechanism for selecting a region type of the target organ;

a mechanism for determining combinations of the at least two geometric feature values that most frequently correspond to the selected region type; and

a mechanism for assigning a color to each of the determined combinations of the at least two geometric feature values that correspond to the selected region type.

15. The system of claim 14, wherein the mechanism for determining the colormap comprises:

a mechanism for obtaining simulated volume data representing the target organ; and

a mechanism for determining, based on the simulated volume data, the at least two geometric feature values for each voxel in the simulated volume data.

16. The system of claim 14, wherein the mechanism for determining the colormap comprises:

a mechanism for obtaining clinical volume data representing the target organ; and

a mechanism for determining, based on the clinical volume data, the at least two geometric feature values for each voxel in the clinical volume data.

17. The system of claim 12, wherein the mechanism for determining the at least two geometric features comprises:

a mechanism for determining, based on the plurality of image data values, a first index at each voxel, the first index being indicative of a local shape at each respective voxel; and

a mechanism for determining, based on the plurality of image data values, a second index at each voxel, the second index being indicative of a local scale at each respective voxel.

18. The system of claim 17, wherein the mechanism for determining the first index comprises:

a mechanism for determining a shape index at each voxel, the shape index being indicative of a local topology at each respective voxel.

19. The system of claim 17, wherein the mechanism for determining the second index comprises:

a mechanism for determining a curvedness index at each voxel, the curvedness index being indicative of a magnitude of a local curvature at each respective voxel.

20. The system of claim 12, further comprising:

a mechanism for detecting an abnormality region in the target organ based on calculated feature values at each voxel in the plurality of voxels,

wherein the mechanism for displaying further comprises a mechanism for displaying the detected abnormality region in a predetermined color.

21. The system of claim 12, wherein the mechanism for obtaining comprises:

a mechanism for obtaining a set of cross-sectional images of the target organ;

a mechanism for obtaining a set of voxels representing a total scanned volume from the set of cross sectional images; and

a mechanism for performing segmentation to extract, from the set of voxels representing the total scanned volume, the plurality of voxels in the volumetric image data of the target organ.

22. A system for displaying volumetric image data of a target organ as a visual aid in detecting at least one abnormality in the target organ, comprising:

an image acquisition unit configured to obtain the volumetric image data of the target organ, the volumetric image data including a plurality of voxels having a respective plurality of image data values;

a processor configured (1) to determine at least two geometric feature values at each voxel in the plurality of voxels based on the plurality of image data values, (2) to determine a colormap by assigning a color to each possible combination of the at least two geometric feature values, wherein each assigned color corresponds to a different region type within the target organ, and (3) to determine a display color for each voxel in the plurality of voxels based on the determined colormap; and

a display unit configured to display a color image representing the volumetric image data of the target organ, based on the determined display color for each voxel in the plurality of voxels.

23. A computer program product configured to store plural computer program instructions which, when executed by a computer, cause the computer perform the steps of:

obtaining the volumetric image data of the target organ, the volumetric image data including a plurality of voxels having a respective plurality of image data values;

determining at least two geometric feature values at each voxel in the plurality of voxels based on the plurality of image data values;

determining a colormap by assigning a color to each possible combination of the at least two geometric feature values, wherein each assigned color corresponds to a different region type within the target organ;

determining a display color for each voxel in the plurality of voxels based on the determined colormap; and

displaying, based on the determined display color for each voxel in the plurality of voxels, a color image representing the volumetric image data of the target organ.

24. The computer program product of claim 23, further comprising:

identifying the at least one abnormality based on the displayed color image.

25. The computer program product of claim 23, wherein the step of determining the colormap comprises:

selecting a region type of the target organ;

determining combinations of the at least two geometric feature values that most frequently correspond to the selected region type; and

assigning a color to each of the determined combinations of the at least two geometric feature values that correspond to the selected region type.

26. The computer program product of claim 25, wherein the step of determining the colormap comprises:

obtaining simulated volume data representing the target organ; and

determining, based on the simulated volume data, the at least two geometric feature values for each voxel in the simulated volume data.

27. The computer program product of claim 25, wherein the step of determining the colormap comprises:

obtaining clinical volume data representing the target organ; and

determining, based on the clinical volume data, the at least two geometric feature values for each voxel in the clinical volume data.

28. The computer program product of claim 25, further comprising:

repeating the steps of selecting a region type, determining combinations, and assigning the color for a plurality of region types of the target organ; and

assigning a color for each possible combination of the at least two geometric feature values not associated with the selected region types by interpolating the colors assigned to the selected region types.

29. The computer program product of claim 23, wherein the step of determining the at least two geometric features comprises:

determining, based on the plurality of image data values, a first index at each voxel, the first index being indicative of a local shape at each respective voxel; and

determining, based on the plurality of image data values, a second index at each voxel, the second index being indicative of a local scale at each respective voxel.

30. The computer program product of claim 29, wherein the step of determining the first index comprises:

determining a shape index at each voxel, the shape index being indicative of a local topology at each respective voxel.

31. The computer program product of claim 29, wherein the step of determining the second index comprises:

determining a curvedness index at each voxel, the curvedness index being indicative of a magnitude of a local curvature at each respective voxel.

32. The computer program product of claim 23, further comprising:

detecting an abnormality region in the target organ based on calculated feature values at each voxel in the plurality of voxels,

wherein the display step further comprises displaying the detected abnormality region in a predetermined color.

33. The computer program product of claim 23, wherein the obtaining step comprises:

obtaining a set of cross-sectional images of the target organ;

obtaining a set of voxels representing a total scanned volume from the set of cross sectional images; and

performing segmentation to extract, from the set of voxels representing the total scanned volume, the plurality of voxels in the volumetric image data of the target organ.