Hybridization apparatus and method

• US 20050170401A1
• Filed: 01/28/2005
• Published: 08/04/2005
• Est. Priority Date: 01/29/2004
• Status: Abandoned Application

• Current Assignee: Canon Ayutthaya Limited (Canon Inc.)
• Original Assignee: Canon Ayutthaya Limited (Canon Inc.)
• Inventors: Sugiyama, Takahiro
• Application Number:
  US11/044,172
• Publication Number:
  US 20050170401A1
• Time in Patent Office: Days
• US Class Current: 435/6
• CPC Class Codes: B01L 2200/143 Quality control, feedback systems
• CPC Class Codes: B01L 2300/0636 Integrated biosensor, microarrays
• CPC Class Codes: B01L 2300/0822 Slides
• CPC Class Codes: B01L 2300/0825 Test strips
• CPC Class Codes: B01L 2300/0877 Flow chambers
• CPC Class Codes: B01L 2400/0406 capillary forces
• CPC Class Codes: B01L 2400/0487 fluid pressure, pneumatics
• CPC Class Codes: B01L 3/5027 by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip B01L3/5023 takes precedence; micromixers B01F33/30; microreactors for synthesis B01J19/0093; microcapillary devices in general B81B1/00
• CPC Class Codes: B01L 3/502723 characterised by venting arrangements
• CPC Class Codes: C12Q 1/6816 characterised by the detection means C12Q1/6804 takes precedence
• CPC Class Codes: C12Q 2565/501 being an array of oligonucleotides
• CPC Class Codes: C12Q 2565/619 being a video camera

Abstract

Hybridization between a sample nucleic acid and a probe nucleic acid with an assay having the probe nucleic acid bound on the surface of a carrier, in which a liquid is fed to the surface of the carrier and the state of the thus-fed liquid is detected. The liquid may, for example, be a hybridization liquid containing the ample nucleic acid, or it may be a washing liquid for flushing byproducts and/or reactants away from the carrier in preparation for detection of hybridization results. Because the state of the liquid is detected, accuracy of hybridization assays is improved, since it becomes possible to detect and avoid difficulties encountered during hybridization and wash processing, such as formation of bubbles and incomplete washing.

Claims

1. A hybridization apparatus for causing hybridization reaction between a sample nucleic acid and a probe nucleic acid by using a nucleic acid chip having the probe nucleic acid bound on the surface of a carrier, which comprises:

a feeding unit for feeding a liquid to the surface of the carrier, and an observing unit for observing the state of the liquid on the surface of the carrier.

2. A hybridization apparatus according to claim 1, wherein the hybridization reaction is performed using a chamber member which forms a space for feeding the liquid to the surface of the carrier, and the feeding unit is an injecting unit for injecting the liquid to the space via an inlet disposed in the chamber member.

3. A hybridization apparatus according to claim 2, wherein the observing unit is a liquid detecting unit for detecting, as a two-dimensional image, the existing state of the liquid fed to the surface.

4. A hybridization apparatus according to claim 3, further comprising a hybridization detecting unit for detecting the hybridization reaction.

5. A hybridization apparatus according to claim 4, wherein the liquid detecting unit also serves as the hybridization detecting unit.

6. A hybridization apparatus according to claim 4, wherein the detection by the liquid detecting unit or the hybridization detecting unit is performed from a side opposite to the surface of the probe carrier on which the probe nucleic acid is bound.

7. A hybridization apparatus according to claim 4, wherein the liquid comprises a sample solution of the sample nucleic acid, and further comprising a judging unit for judging the dispersion state of the sample solution based on the detection results by the liquid detecting unit.

8. A hybridization apparatus according to claim 4, further comprising a control unit for controlling in accordance with results of the judgment on the dispersion state of the sample solution and hybridization detection results by the hybridization detecting unit.

9. A hybridization apparatus according to claim 1, wherein the liquid is a sample solution containing the sample nucleic acid.

10. A hybridization apparatus according to claim 1, wherein the liquid is a washing liquid for washing the space after the hybridization reaction.

11. A hybridization apparatus according to claim 10, wherein the washed state on the surface of the nucleic acid chip is assessed based on the liquid state observed by the observation unit.

12. A hybridization apparatus according to claim 1, further comprising a heating unit for heating the liquid fed to the surface of the carrier.

13. A hybridization apparatus according to claim 1, further comprising a stirring unit for stirring the liquid fed to the surface of the carrier.

14. A method for causing hybridization reaction between a sample nucleic acid and a probe nucleic acid by using a nucleic acid chip having the probe nucleic acid bound on the surface of a carrier, which comprises:

feeding a liquid to the surface of the carrier and detecting the existing state of the liquid thus fed to the surface.

15. A method according to claim 14, wherein the detection of the existing state of the liquid is to obtain the diffusion state of the liquid on the surface of the carrier as a two-dimensional image.

16. A method according to claim 15, wherein the liquid is fed to attain a uniform diffusion state in accordance with the two-dimensional image thus obtained.

17. A method according to claim 15, wherein the liquid comprises a hybridization solution of the sample nucleic acid, and wherein the two-dimensional image is obtained upon feeding of the hybridization solution.

18. A method according to claim 15, wherein the liquid comprises a washing liquid, and wherein the two-dimensional image is obtained upon feeding of the washing liquid.

19. A method according to claim 15, wherein the liquid comprises a hybridization solution of the sample nucleic acid, and wherein the two-dimensional image of the hybridization solution is obtained during hybridizaiton.

20. A method according to claim 15, wherein the solution is stirred in accordance with the two-dimensional image obtained.

21. A detecting method of a sample nucleic acid by using a nucleic acid chip having a probe nucleic acid bound on the surface of a carrier, which comprises:

effecting hybridization reaction as claimed in any one of claims 15 to 20, and

detecting the sample nucleic acid bound with the probe nucleic acid on the carrier.