Method and apparatus for improved simulation of chemical and biochemical reactions
First Claim
1. A system for improved simulation of a biological system comprising a plurality of chemical reactions, the system comprising:
- a modeling component for constructing a model of a biological system including a first chemical reaction and a second chemical reaction; and
a simulation engine accepting as input said constructed model of the biological system and generating as output dynamic behavior of the biological system using a first type of computational model for the first chemical reaction and a second type of computational model for the second chemical reaction.
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Accused Products
Abstract
An integrated system for modeling, simulating and analyzing chemical and biochemical reactions includes a modeling environment for constructing a model of a chemical or biochemical reaction. The system also includes a simulation engine accepting as input said constructed model of the chemical or biochemical reaction and generating as output an expected result for a first chemical reaction using a first type of computational model and an expected result for a second chemical reaction using a second type of computational model. An analysis environment communicates with the simulation engine and displays the expected result
35 Citations
44 Claims
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1. A system for improved simulation of a biological system comprising a plurality of chemical reactions, the system comprising:
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a modeling component for constructing a model of a biological system including a first chemical reaction and a second chemical reaction; and
a simulation engine accepting as input said constructed model of the biological system and generating as output dynamic behavior of the biological system using a first type of computational model for the first chemical reaction and a second type of computational model for the second chemical reaction. - View Dependent Claims (2, 3, 4, 5, 6, 7, 8)
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9. An improved method for simulation of a biological system including a first chemical reaction and a second chemical reaction, the method comprising the steps of:
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(a) constructing a model of the biological system including a first chemical reaction and a second chemical reaction; and
(b) generating dynamic behavior of the modeled biological system using a first type of computational model for the first chemical reaction and a second type of computational model for the second chemical reaction. - View Dependent Claims (10, 11, 12, 13, 14, 15)
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16. An article of manufacture having embodied thereon computer-readable program means for improved simulation of a biological system comprising a plurality of chemical reactions, the article of manufacture comprising:
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computer-readable program means for constructing, using the received user commands and data, a model of a biological system including a first chemical reaction and a second chemical reaction;
computer-readable program means for generating, using the constructed model of the biological system, dynamic behavior of the modeled biological system using a first type of computational model for the first chemical reaction and a second type of computational model for the second chemical reaction. - View Dependent Claims (17, 18, 19, 20, 21, 22)
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23. A system for improved simulation of chemical reactions comprising:
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a modeling component for constructing a model of a first chemical reaction and a second chemical reaction; and
a simulation engine accepting as input said constructed model of the chemical reaction and generating as output an expected result using a first type of computational model for the first chemical reaction and a second type of computational model for the second chemical reaction. - View Dependent Claims (24, 25, 26, 27, 28, 29, 30)
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31. An improved method for simulation of chemical reactions, the method comprising the steps of:
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(a) constructing a model of a first chemical reaction and a second chemical reaction; and
(b) generating an expected result of the first modeled chemical reaction using a first type of computational model and generating a second modeled chemical reaction for the second chemical reaction using a second type of computational model. - View Dependent Claims (32, 33, 34, 35, 36, 37)
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38. An article of manufacture having embodied thereon computer-readable program means for improved simulation of chemical reactions, the article of manufacture comprising:
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computer-readable program means for constructing a model of a first chemical reaction and a second chemical reaction;
computer-readable program means for generating an expected result for the first chemical reaction using a first type of computational model and generating an expected result for the second chemical reaction using a second type of computational model. - View Dependent Claims (39, 40, 41, 42, 43, 44)
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Specification