Binding assays using molecular melt curves

• US 20050202470A1
• Filed: 01/11/2005
• Published: 09/15/2005
• Est. Priority Date: 11/16/2000
• Status: Abandoned Application

• Current Assignee: Caliper Life Sciences Incorporated (Revvity, Inc.)
• Original Assignee: Caliper Life Sciences Incorporated (Revvity, Inc.)
• Inventors: Knapp, Michael R., Sundberg, Steven A.
• Application Number:
  US11/032,749
• Publication Number:
  US 20050202470A1
• Time in Patent Office: Days
• US Class Current: 435/6
• CPC Class Codes: C12Q 1/6816 characterised by the detection means C12Q1/6804 takes precedence
• CPC Class Codes: C12Q 2527/107 Temperature of melting, i.e. Tm
• CPC Class Codes: C12Q 2565/629 being a microfluidic device

Abstract

The present invention provides novel microfluidic devices and methods that are useful for performing binding assays through construction of molecular melt curves. In particular, the devices and methods of the invention are useful in screening large numbers of different test molecules for their binding ability to target molecules.

Claims

1-108. -108. (canceled)

109. A method of performing binding assays on a plurality of samples, the method comprising:

(a) loading one of the plurality of samples into a microfluidic device;

(b) directing the one sample to a temperature controlled region of the microfluidic device;

(c) exposing the one sample to a range of temperatures within the temperature controlled region while monitoring a detectable property of the first sample;

(d) directing the one sample out of the temperature controlled region of the microfluidic device; and

repeating steps (a)-(e) for each sample of the plurality of samples.

110. The method of claim 109, wherein the step of loading the one sample into a microfluidic device comprises loading the one sample into a channel of the microfluidic device through a sipper capillary.

111. The method of claim 109, wherein the step of exposing the sample to a range of temperatures while monitoring a detectable property further comprises generating a molecular melt curve.

112. The method of claim 109, wherein the sample comprises a compound selected from the group consisting of a protein, a nucleic acid, a ligand, a peptide nucleic acid, a cofactor, a receptor, a substrate, an antibody, an antigen, and a polypeptide.

113. The method of claim 109, wherein the detectable property is fluorescence.

114. The method of claim 109, wherein the detectable property is a dielectric property.

115. The method of claim 109, wherein the detectable property is a calorimetric property.

116. The method of claim 113, wherein the detectable property is fluorescence polarization.

117. The method of claim 109, wherein the step of exposing the one sample to a range of temperatures comprises heating the sample using non-joule heating.

118. The method of claim 109, wherein the step of exposing the one sample to a range of temperatures comprises heating the sample using joule heating.

119. The method of claim 109, wherein the non-joule heating method comprises resistive heating.

120. The method of claim 109, wherein the steps of directing the one sample into and out of the temperature controlled region comprise moving the one sample through the application of electrical fields.

121. The method of claim 109, wherein the steps of directing the one sample into and out of the temperature controlled region comprise moving the one sample through the application of pressure.

122. The method of claim 111, wherein the sipper capillary couples the microfluidic device to a well containing the sample in a microwell plate.

123. A method of screening a plurality of test compounds to determine whether each of the plurality of test compounds modifies a binding reaction between a first molecule and a second molecule, which binding reaction produces a binding product, the method comprising:

(a) loading one of the plurality of compounds into a microfluidic device;

(b) mixing the one of plurality of test compounds with a solution comprising the first molecule and the second molecule within a channel in the microfluidic device;

(c) generating a molecular melt curve for the binding product generated within the channel; and

repeating steps (a)-(c) for each sample of the plurality of test compounds.

124. The method of claim 123, wherein the step of generating a molecular melt curve further comprises the step of comparing the generated curve to a molecular melt curve for the binding product generated in the absence of any test compound.

125. The method of claim 123, wherein the first molecule and the second molecule are an enzyme and a substrate respectively.

127. The method of claim 123, wherein each of the plurality of test compound and the first molecule are both nucleic acids.

126. A method of screening a plurality of test compounds to determine whether each of the plurality of test compounds binds with a first molecule to produce a binding product, the method comprising:

(a) loading one of the plurality of compounds into a microfluidic device;

(b) mixing the one of plurality of test compounds with a solution comprising the first molecule within a channel in the microfluidic device;

(c) generating a molecular melt curve for the binding product generated within the channel; and

repeating steps (a)-(c) for each sample of the plurality of test compounds.

128. A method of screening a plurality of test compounds to determine whether each of the plurality of test compounds modifies the thermal stability of a first molecule, the method comprising:

(a) loading one of the plurality of compounds into a microfluidic device;

(b) mixing the one of plurality of test compounds with a solution comprising the first molecule within a channel in the microfluidic device;

(c) generating a molecular melt curve for the first molecule within the channel; and

repeating steps (a)-(c) for each sample of the plurality of test compounds.