Methods and reagents for surface functionalization

• US 20050233473A1
• Filed: 11/02/2004
• Published: 10/20/2005
• Est. Priority Date: 08/16/2002
• Status: Abandoned Application

• Current Assignee: Zyomyx, Inc.
• Original Assignee: Zyomyx, Inc.
• Inventors: Schweizer, Stefan, Cicero, Ronald, Forman, Jonathan, Quincy, David, Wagner, Peter, Kernen, Peter, Lu, Hongbo
• Application Number:
  US10/980,597
• Publication Number:
  US 20050233473A1
• Time in Patent Office: Days
• US Class Current: 436/518
• CPC Class Codes: B82Y 30/00 Nanotechnology for materials or surface science, e.g. nanocomposites
• CPC Class Codes: G01N 33/54393 Improving reaction conditions or stability, e.g. by coating or irradiation of surface, by reduction of non-specific binding, by promotion of specific binding

Abstract

Reagents and a method for making arrays of affinity agents are disclosed. Methods of using the arrays of affinity agents also are disclosed. The arrays are particularly useful for high throughput drug screening and clinical diagnostics applications.

Claims

1. A method for functionalizing a substrate, comprising:

providing a substrate;

contacting the substrate with a first reagent having at least first and second reactive functional groups such that the first reagent is operationally associated with the substrate by the first functional group thereby forming a monolayer;

associating a second reagent with the monolayer, the second reagent comprising a first functional group for association with the monolayer and at least a second functional group; and

associating a protein resistant reagent with the monolayer.

2. The method according to claim 1, wherein the first reagent is covalently bound to the substrate.

3. The method according to claim 1, wherein the first reagent is associated with the substrate by means of a functional group selected from the group consisting of a sulfur-containing group, siloxane, phosphine, phosphoric acid;

phosphonic acid;

hydroxamic acid, carboxylic acid, and combinations thereof.

4. The method according to claim 1, wherein the first reagent comprises one or more of a functional group selected from the group consisting of a sulfur-containing group, ester, activated ester, Michael acceptor, siloxane, silyl halide, phosphine, amine, azide, α

, β

-unsaturated ketone, hydroxyl, sulfhydryl, thiosemicarbazide, hydrazide, aminooxy group, aldehyde, alkyl halide, hydroxamic acid, and carboxylic acid.

5. The method according to claim 1, wherein the second reagent is covalently attached to the monolayer by means of an alkylation, chemoselective ligation, Michael addition, organometallic reaction, cycloaddition or acylation reaction.

6. The method according to claim 1, wherein the second reagent comprises one or more of a phosphine, amine, azide, α

, β

-unsaturated ketone, hydroxyl, sulfhydryl, thiosemicarbazide, hydrazide, aminooxy group, aldehyde, or alkyl halide.

7. The method according to claim 1, wherein the protein resistant component is covalently attached to the monolayer by means of an alkylation, Michael, Staudinger ligation, organometallic, cycloaddition, or acylation reaction.

8. The method according to claim 1, wherein the substrate is selected from the group consisting of gold, platinum, silver, copper, glass, silicon, silicon oxide, silicon nitride, tantalum oxide, titanium oxide, indium tin oxide, magnesium oxide, alumina, quartz, silica and combinations thereof.

9. The method according to claim 1, wherein the substrate comprises a noble metal and the first functional group of the first reagent is a sulfur-containing group.

10. The method according to claim 9, wherein the sulfur-containing group comprises a sulfhydryl group or a disulfide group.

11. The method according to claim 1, wherein the substrate comprises glass or silicon and the first functional group of the first reagent comprises a siloxane or silyl halide group.

12. The method according to claim 1, wherein the second reactive functional group of the first reagent includes one or more azide, amine, maleimide, phosphine, amine, azide, α

, β

-unsaturated ketone, hydroxyl, sulfhydryl, thiosemicarbazide, hydrazide, aminooxy group, aldehyde, alkyl halide, carboxy or activated ester groups.

13. The method according to claim 1, wherein the protein resistant reagent comprises at least one of a polyalkylene oxide group, polysulfone, polysaccharide, or a phosphocholine group.

14. The method according to claim 1, wherein the protein resistant reagent comprises a polyethylene glycol group.

15. The method according to claim 1, further comprising associating an affinity agent to the second functional group of the second reagent.

16. The method according to claim 15, further comprising quenching any remaining second functional groups.

17. The method according to claim 15, wherein the affinity agent comprises a protein.

18. The method according to claim 15, wherein associating the affinity agent to the second functional group of the second reagent comprises forming a covalent bond.

19. The method according to claim 18, wherein the covalent bond is formed by a reaction selected from the group consisting of alkylation, chemoselective ligation, Michael addition, organometallic reaction, cycloaddition and acylation reactions.

20. The method according to claim 18, wherein the covalent bond is formed by a Staudinger ligation reaction.

21. The method according to claim 15, wherein the second functional group of the second reagent comprises a biotin group and the affinity agent is a streptavidin.

22. The method according to claim 21, further comprising associating a biotinylated affinity agent to the streptavidin.

23. The method according to claim 22, wherein the biotinylated affinity agent is a biotinylated antibody.

24. A method for forming a monolayer, comprising:

providing a substrate;

contacting the substrate with an asymmetric disulfide, having a reactive functional group and a protein resistant functional group, thereby forming a monolayer on the substrate.

25. The method according to claim 24, wherein the asymmetric disulfide has the formula

26. The method according to claim 24, wherein the asymmetric disulfide has the formula

27. The method according to claim 24, further comprising contacting the substrate with a second disulfide thereby incorporating two corresponding sulfides into the monolayer.

28. An organic thinfilm array, comprising:

a substrate;

plural first reagents having first and second ends, the first end of the first reagents being operatively associated with the substrate;

plural second reagents, each second reagent having first and second ends and the first ends of the second reagent being operatively associated with the second end of the first reagent; and

a third reagent having a first end operatively associated with the second end of the first reagent and a second end, the third reagent comprising a protein resistant functional group.

29. The array according to claim 28, wherein the substrate is selected from the group consisting of gold, platinum, silver, copper, glass, silicon, silicon oxide, silicon nitride, tantalum oxide, titanium oxide, indium tin oxide, magnesium oxide, alumina, quartz, silica and combinations thereof.

30. The array according to claim 28, wherein the first reagent is covalently bound to the substrate.

31. The array according to claim 28, wherein the first reagent is associated with the substrate by means of a sulfur-containing group, siloxane, phosphine, hydroxamic acid, carboxylic acid, and combinations thereof.

32. The array according to claim 28, wherein the first reagent is associated with the substrate by at least one interaction comprising at least one of a metal-ligand bond, siloxane bond or a Coulombic interaction.

33. The array according to claim 28, wherein the wherein the second reagent is covalently attached to the first reagent.

34. The array according to claim 33, wherein the second reagent is covalently attached to the first reagent by means of an alkylation, chemoselective ligation, Michael addition, organometallic reaction, cycloaddition or acylation reaction.

35. The array according to claim 33, wherein the second reagent is covalently attached to the first reagent by means of a Staudinger ligation.

36. The array according to claim 33, wherein the second reagent is covalently attached to the first reagent by an amide, ether, ester, imide, sulfide, or carbon-carbon bond.

37. An array device comprising:

a substrate having an array of discrete array regions formed on the surface;

plural first reagents having first and second ends, the first end of the first reagents being operatively associated with the substrate;

plural second reagents, each second reagent having first and second ends and the first ends of the second reagent being operatively associated with the second end of the first reagent.