Polypeptides that bind an anti-tissue factor antibody and uses thereof

• US 20060177446A1
• Filed: 11/29/2005
• Published: 08/10/2006
• Est. Priority Date: 05/30/2003
• Status: Abandoned Application

• Current Assignee: Genentech, Inc. (Roche Holding AG)
• Original Assignee: Genentech, Inc. (Roche Holding AG)
• Inventors: Presta, Leonard G., Kirchhofer, Daniel K., Meng, Yu-Ju G., Eigenbrot, Charles
• Application Number:
  US11/290,770
• Publication Number:
  US 20060177446A1
• Time in Patent Office: Days
• US Class Current: 424/145.100
• CPC Class Codes: C07K 16/4241 against anti-human or anti-animal Ig
• CPC Class Codes: C07K 16/4258 against anti-receptor Ig
• CPC Class Codes: C07K 2317/21 from primates, e.g. man
• CPC Class Codes: C07K 2317/24 containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
• CPC Class Codes: C07K 2317/55 Fab or Fab'
• CPC Class Codes: C07K 2317/75 Agonist effect on antigen
• CPC Class Codes: C07K 2317/76 Antagonist effect on antigen, e.g. neutralization or inhibition of binding
• CPC Class Codes: C07K 2317/92 Affinity (KD), association rate (Ka), dissociation rate (Kd) or EC50 value

Abstract

The present invention relates to antibodies and polypeptides useful in blocking the binding of antibodies to anti-tissue factor, decreasing the activity of the anti-tissue factor antibodies and/or neutralizing the activity of an anti-tissue factor antibody. The present invention also relates to nucleic acids encoding the antibodies and polypeptides and compositions comprising the antibodies or polypeptides or nucleic acid molecules. The present invention provides methods of treating a hypercoagulable state or an inflammatory disease using the antibodies and polypeptides of this invention and other methods of using said antibodies and polypeptides.

Claims

1. An AATF antibody that specifically binds to a variable region of an anti-tissue factor antibody (ATF antibody) that specifically binds to an extracellular domain of a tissue factor.

2. The AATF antibody according to claim 1, wherein the ATF antibody binds to a region of tissue factor that interacts with Factor X.

3. The AATF antibody according to claim 2, wherein the region is within residues 156-204 of a human tissue factor.

4. The AATF antibody according to claim 1, wherein the ATF antibody comprises an amino acid sequence selected from the group consisting of the sequence of FIG. 13A and the sequence of FIG. 13B.

5. The AATF antibody according to claim 4, wherein the AATF antibody binds to a region having a sequence selected from the group consisting of:

(a) residues 26-35 of FIG. 13A;

(b) residues 50-65 of FIG. 13A;

(c) residues 95-102 of FIG. 13A;

(d) residues 24-34 of FIG. 13B;

(e) residues 50-56 of FIG. 13B; and

(f) residues 89-97 of FIG. 13B;

6. The AATF antibody according to claim 5, wherein the ATF antibody binds to the regions recited in (a)-(f).

7. The AATF antibody according claim 1, wherein the AATF antibody binds to the ATF antibody with an equilibrium dissociation constant (K_D) selected from the group consisting of 1 μ

M or less, 500 nM or less, 100 nM or less, 50 nM or less, 10 nM or less, 5 nM or less and 1 nM or less.

8. The AATF antibody according to claim 1, wherein the antibody inhibits binding of an ATF antibody to a tissue factor.

9. The AATF antibody according to claim 4 that comprises amino acid sequences:

(a) residues 31-35 of FIG. 11B;

(b) residues 50-65 of FIG. 11B;

(c) residues 94-102 of FIG. 11B;

or

a variant of the AATF antibody that binds the ATF antibody.

10. The AATF antibody according claim 9, wherein the AATF antibody further comprises amino acid sequences:

(a) residues 26-35 of FIG. 12B;

(b) residues 50-56 of FIG. 12B; and

(c) residues 89-97 of FIG. 12B;

or

a variant of the AATF antibody that binds the ATF antibody.

11. The AATF antibody according to claim 4, where the AATF antibody comprises the sequence of FIG. 11B, or a variant thereof.

12. The AATF antibody according to claim 4, wherein the antibody comprises comprises the sequence of FIG. 12B, or a variant thereof.

13. The AATF antibody according to claim 4, where the AATF antibody comprises (a) a variable heavy chain region comprising the sequence of FIG. 11B, or a variant thereof, and (b) a variable light chain region comprising the sequence of FIG. 12B, or a variant thereof.

14. The AATF antibody according to claim 1, wherein the AATF antibody is a monoclonal antibody.

15. The AATF antibody according to claim 1, wherein the AATF antibody is selected from the group consisting of a chimeric antibody, a humanized antibody and an antibody fragment.

16. The AATF antibody according to claim 15, wherein the AATF antibody has a framework region that has been derived from one or more human antibodies.

20. The AATF antibody according to claim 1, wherein the AATF antibody is further conjugated to an agent selected from the group consisting of a growth inhibitory agent, a cytotoxic agent, a detection agent, an agent that improves the bioavailability of the antibody and an agent that improves the half-life of the antibody.

21. The AATF antibody according to claim 20, wherein said cytotoxic agent is selected from the group consisting of a toxin, an antibiotic and a radioactive isotope.

22. The AATF antibody according to claim 1, wherein said AATF antibody is produced in bacteria or in a mammalian cell.

23. The AATF antibody according to claim 22, wherein said mammalian cell is a CHO cell.

31. A nucleic acid molecule encoding the antibody according claim 1.

33. A vector comprising the nucleic acid molecule according to claim 31.

34. A host cell comprising the vector according to claim 33.

35. A composition comprising the antibody according to claim 1, optionally, further comprising a second therapeutic agent.

37. The composition according to claim 35, wherein the second therapeutic agent is a procoagulant.

38. The composition according to claim 37, wherein the procoagulant is NovoSeven®

.

39. A composition comprising the nucleic acid molecule according to claim 31.

40. The composition according to claim 35, further comprising a pharmaceutically acceptable carrier.

41. An article of manufacture comprising:

(a) a composition of matter comprising an antibody according to claim 1, a polypeptide according to claim 24, an inactive Tissue Factor (iTF);

(b) a container containing said composition;

(c) a label affixed to said container, or a package insert included in said container referring to the use of said antibody, said polypeptide, or said iTF in the treatment of a hypercoagulable state, in the treatment of an inflammatory disorder or as a diagnostic agent;

and optionally, further comprising an anti-tissue factor antibody.

42. A method for producing an antibody comprising the step of culturing a host cell comprising a vector comprising the nucleic acid molecule according to claim 31.

43. The method according to claim 42, wherein the cell is a bacterial cell or a mammalian cell.

44. The method according to claim 47, wherein the mammalian cell is a CHO cell.

45. A method for treating a hypercoagulable state in a mammal in need of treatment therefor comprising the step of administering a therapeutically effective amount of an anti-tissue factor antibody and subsequently a therapeutically effective amount of an antagonist agent selected from the group consisting of the antibody according to claim 1, the polypeptide according to claim 25 or an inactive tissue factor (iTF).

46. A method for treating an inflammation in a mammal in need of treatment therefor comprising the step of administering a therapeutically effective amount of an anti-tissue factor antibody and subsequently a therapeutically effective amount an antagonist agent selected from the group consisting of the antibody according to claim 1, the polypeptide according to claim 24 or an inactive tissue factor (iTF).

47. The method according to claim 45, wherein the mammal is suffering from an illness selected from the group consisting of stroke, atherosclerosis, restenosis, sepsis, septicemia, acute coronary syndrome, disseminated intravascular coagulation (DIC), myocardial infarction, deep vein thrombosis, sickle cell disease, arterial thrombosis, venous thromboembolism, hypertension, adult respiratory distress syndrome (ARDS) and cancer.

17. A monoclonal antibody that binds essentially the same epitope as an antibody produced by the hybridoma cell line having the ATCC Deposit No. PTA-5066, deposited Mar. 20, 2003 as designation 6A6.3E11.2E12 in the American Type Culture Collection (ATCC), 10801 University Blvd., Manassas, Va. 20110-2209, USA.

18. A monoclonal antibody having the biological characteristics of a 6A6 antibody produced by the hybridoma cell line having the ATCC Deposit No. PTA-5066, deposited Mar. 20, 2003 as designation 6A6.3E11.2E12 in the American Type Culture Collection (ATCC), 10801 University Blvd., Manassas, Va. 20110-2209, USA.

19. The monoclonal antibody according to claim 18 that is the antibody produced by the hybridoma cell line having the ATCC Deposit No. PTA-5066.

24. An AATF polypeptide that binds to an ATF antibody comprising the sequences of FIG. 13A and FIG. 13B, wherein the polypeptide comprises sequences:

(a) residues 31-35 of FIG. 11B;

(b) residues 50-65 of FIG. 11B;

(c) residues 94-102 of FIG. 11B;

(d) residues 26-35 of FIG. 12B;

(e) residues 50-56 of FIG. 12B; and

(f) residues 89-97 of FIG. 12B;

or

a variant of the AATF polypeptide that binds to an antibody comprising the sequences of FIG. 13A and FIG. 13B.

25. The AATF polypeptide according to claim 24, wherein the AATF polypeptide is selected from the group consisting of a chimeric antibody, a humanized antibody and an antibody fragment.

32. A nucleic acid molecule encoding the polypeptide according to claim 24.

36. A composition comprising the polypeptide according to claim 24 further comprising a second therapeutic agent.

26. A AATF polypeptide comprising binding site described by the structural coordinates of amino acid residues T29, S30, Y32, W91, S93, W96 of a light chain according to Table 7 and amino acid residues Y27, H32, L50, H52, H53, N54, R94, E95, F97, R98, Y99, Y100A of a heavy chain according to Table 7.

27. A AATF polypeptide comprising a sequence starting at one of amino acid residues G31 to H32 and ending at one of amino acid residues Y100A to Y102 as set forth in FIG. 11B.

28. A crystalline form of an antibody having the atomic coordinates recited in Table 8.

29. A crystalline form of a protein complex having the atomic coordinates recited in Table 8.

30. A crystalline form of a protein complex having unit cell parameters of a=78.9 Å

, b=85.8 Å

, c=92.4 Å

, α

=77.5°

, β

=75.9° and

γ

=63.3°

.