Fluorescent detection system and dye set for use therewith

• US 20060252079A1
• Filed: 05/03/2006
• Published: 11/09/2006
• Est. Priority Date: 05/03/2005
• Status: Abandoned Application

• Current Assignee: Applied Biosystems LLC (Thermo Fisher Scientific Incorporated)
• Original Assignee: Applera Corporation (Thermo Fisher Scientific Incorporated)
• Inventors: Oldham, Mark F., Boege, Steven J., King, Howard G.
• Application Number:
  US11/416,591
• Publication Number:
  US 20060252079A1
• Time in Patent Office: Days
• US Class Current: 435/6
• CPC Class Codes: B82Y 10/00 Nanotechnology for information processing, storage or transmission, e.g. quantum computing or single electron logic
• CPC Class Codes: B82Y 20/00 Nanooptics, e.g. quantum optics or photonic crystals
• CPC Class Codes: B82Y 5/00 Nanobiotechnology or nanomedicine, e.g. protein engineering or drug delivery
• CPC Class Codes: C12Q 1/6818 involving interaction of two or more labels, e.g. resonant energy transfer
• CPC Class Codes: G01N 2021/6419 Excitation at two or more wavelengths
• CPC Class Codes: G01N 2021/6421 Measuring at two or more wavelengths
• CPC Class Codes: G01N 2021/6441 with two or more labels
• CPC Class Codes: G01N 21/6428 Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes" in vivo A61B5/00; immunoassay G01N33/53
• CPC Class Codes: G01N 33/542 with steric inhibition or signal modification, e.g. fluorescent quenching
• CPC Class Codes: G01N 33/582 with fluorescent label

Abstract

A system is provided that can comprise: at least two excitation sources, each adapted to provide a different excitation wavelength than at least one other; at least one detector; and a plurality of spectrally resolvable dyes. A set of dyes is also provided and can comprise one or more energy transfer dyes and each energy transfer dye can include two or more fluorescence resonance energy transfer dye moieties linked together. A set of energy transfer dyes is also provided wherein each energy transfer dye of the set comprises a different donor dye moiety than the other energy transfer dyes of the set, and the same acceptor dye moiety as the other energy transfer dyes of the set. A method of detection using the system is also provided.

Claims

1. A system comprising:

at least two excitation sources, each excitation source adapted to provide a different excitation wavelength range than at least one other of the excitation sources;

at least one detector; and

a plurality of dyes, wherein each dye of the plurality of dyes absorbs radiation at a substantially non-overlapping peak absorption range compared to the other dyes of the plurality, each dye of the plurality emits radiation within a peak emission wavelength range that substantially overlaps a peak emission wavelength range of at least one other dye of the plurality, at least a first dye of the plurality of dyes has a first peak absorption wavelength range that overlaps with the excitation wavelength range of a first of the at least two excitation sources, and at least a second dye of the plurality of dyes has a second peak absorption wavelength range that overlaps with the excitation wavelength range of a second of the at least two excitation sources.

2. The system of claim 1, wherein the plurality of dyes comprises at least one energy transfer dye comprising:

a donor dye moiety excitable at a different excitation wavelength than at least one other dye of the plurality of dyes; and

an acceptor dye moiety that emits radiation upon excitation at a same wavelength as a wavelength emitted by at least one other dye of the plurality of dyes, upon excitation.

3. The system of claim 1, wherein the plurality of dyes comprises at least two energy transfer dyes, wherein each energy transfer dye comprises:

a donor dye moiety excitable at a different excitation wavelength than at least one other donor dye moiety of at least one of the other at least two energy transfer dyes; and

an acceptor dye moiety that emits radiation upon excitation at a same wavelength as at least one other acceptor dye moiety of at least one of the other at least two energy transfer dyes, upon excitation.

4. The system of claim 3, wherein the donor dye moiety of at least one of the at least two energy transfer dyes comprises at least one of a ROX moiety and a TAMRA moiety.

5. The system of claim 1, wherein the system comprises a single high pass filter adjacent the at least one detector.

6. The system of claim 1, further comprising a controller for independently actuating the at least two excitation sources.

7. The system of claim 1, wherein the at least two excitation sources comprises one or more of a light-emitting diode, a solid-state laser, a quantum dot-based radiation-emitting diode, a nanotube field emitter radiation source, an organic LED, and a combination thereof.

8. The system of claim 1, wherein the at least one detector comprises one or more of a single wavelength detector, a multiple wavelength detector, a multiplex detector, a photodiode, a photodiode array, a charge-coupled device, a complementary metal oxide semiconductor, a photomultiplexer tube, an avalanche photodiode, and a combination thereof.

9. The system of claim 1, wherein the first peak absorption wavelength range is 20 nanometers (nm) wide, the second peak absorption wave length range is 20 nm wide, and the first peak absorption wave length range overlaps with the second peak absorption wavelength range by no more than about ten percent.

10. The system of claim 1, wherein the first peak absorption wavelength range is 20 nanometers (nm) wide, the second peak absorption wave length range is 20 nm wide, and the first peak absorption wave length range overlaps with the second peak absorption wavelength range by no more than about two percent.

11. The system of claim 1, wherein the peak emission wavelength range of at least one dye of the plurality of dyes is a first range that is 20 nm wide, the peak emission wavelength range of at least one other dye of the plurality of dyes is a second range that is 20 nm wide, and the first range overlaps the second range by at least about fifty percent.

12. The system of claim 1, wherein the peak emission wavelength range of at least one dye of the plurality of dyes is a first range that is 20 nm wide, the peak emission wavelength range of at least one other dye of the plurality of dyes is a second range that is 20 nm wide, and the first range overlaps the second range by at least about seventy percent.

13. The system of claim 1, wherein at least one dye of the plurality of dyes is an energy transfer dye, and the energy transfer dye comprises a quencher dye moiety linked to at least one of a donor dye moiety, an acceptor dye moiety, and a linker moiety.

14. A kit comprising a plurality of fluorescent dyes, wherein each dye of the plurality of fluorescent dyes absorbs radiation within a substantially non-overlapping peak absorption wavelength range compared to the other dyes of the plurality, and each dye of the plurality emits radiation within a peak emission wavelength range that substantially overlaps a peak emission wavelength range of at least one other dye of the plurality.

15. The kit of claim 14, wherein the plurality of fluorescent dyes comprises one or more energy transfer dyes, each of said one or more energy transfer dyes comprising:

a donor dye moiety adapted to absorb radiation within a first peak absorption wavelength range and emit excitation energy; and

an acceptor dye moiety adapted to absorb excitation energy emitted by the donor dye moiety and emit radiation within a first peak emission wavelength range.

16. The kit of claim 15, wherein at least one of the one or more energy transfer dyes further comprises a linker moiety that links the respective donor dye moiety to the respective acceptor dye moiety.

17. The kit of claim 14, further comprising a single container, and wherein the plurality of fluorescent dyes is disposed within the single container.

18. The kit of claim 14, wherein each dye of the plurality of fluorescent dyes is contained in a respective container separate from at least one other dyes of the plurality of fluorescent dyes.

19. The kit of claim 14, wherein the plurality of dyes comprises two or more energy transfer dyes, each of the two or more energy transfer dyes comprises a respective donor dye moiety that has a different peak absorption wavelength range than the donor dye moiety of at least one other of the two or more energy transfer dyes, and each of the two or more energy transfer dyes comprises an acceptor dye moiety that has a respective peak emission wavelength range that overlaps with the peak emission wavelength range of the acceptor dye moiety of at least one other of the two or more energy transfer dyes.

20. The kit of claim 14, wherein each dye of the plurality of fluorescent dyes absorbs radiation at a respective peak absorption wavelength range of 20 nm, and each respective peak absorption wavelength range of 20 nm overlaps each of the other respective peak absorption wavelength ranges by an amount in the range of from zero percent to about ten percent.

21. The kit of claim 14, wherein each dye of the plurality of fluorescent dyes absorbs radiation at a respective peak absorption wavelength range of 20 nm, and each respective peak absorption wavelength range of 20 nm overlaps each of the other respective peak absorption wavelength ranges by an amount in the range of from zero percent to about two percent.

22. The kit of claim 14, wherein each respective peak absorption wavelength range comprises a range of 20 nm and is free of any overlap with any of the other respective peak absorption wavelength ranges.

23. The kit of claim 14, wherein each dye of the plurality of fluorescent dyes emits radiation, upon excitation, at a respective peak emission wavelength range of 20 nm, and each respective peak emission wavelength range of 20 m overlaps, by at least about 50%, with at least one other peak emission wavelength range of 20 nm of at least one other dye of the plurality of fluorescent dyes.

24. The kit of claim 23, wherein each dye of the plurality of fluorescent dyes emits radiation, upon excitation, at a peak emission wavelength range of 20 nm that overlaps, by at least about 70%, with the peak emission wavelength range of 20 nm of at least one other dye of the plurality of fluorescent dyes.

25. The kit of claim 23, wherein each dye of the plurality of fluorescent dyes emits radiation, upon excitation, at a peak emission wavelength range of 20 nm that overlaps, by at least about 95%, with the peak emission wavelength range of 20 nm of at least one other dye of the plurality of fluorescent dyes.

26. The kit of claim 16, wherein at least one of the one or more energy transfer dyes further comprises a quencher dye moiety linked to at least one of the respective donor dye moiety, the respective acceptor dye moiety, and the respective linker moiety.

27. The kit of claim 14, wherein at least one of the plurality of fluorescent dyes is a non-(energy transfer) dye.

28. The kit of claim 14, wherein each dye of the plurality of fluorescent dyes comprises a labeled nucleotide or a labeled nucleic acid sequence.

29. The kit of claim 28, wherein the dyes of the plurality of fluorescent dyes are disposed together in a mixture.

30. A method comprising:

providing a mixture comprising at least two dyes with a nucleic acid sequence-containing sample, wherein each dye of the plurality of dyes absorbs radiation within a substantially non-overlapping peak absorption wavelength range compared to the other dyes of the plurality, and each dye of the plurality emits radiation within a peak emission wavelength range that substantially overlaps a peak emission wavelength range of at least one other dye of the plurality;

irradiating the sample with a first excitation wavelength range;

detecting radiation emitted from the at least two dyes upon irradiation of the sample with the first excitation wavelength range;

irradiating the sample with a second excitation wavelength range that differs from the first excitation wavelength range; and

detecting radiation emitted from the at least two dyes upon irradiation of the sample with the second excitation wavelength range.

31. The method of claim 30, further comprising:

independently actuating at least two excitation sources to provide the at least two different excitation wavelengths at two different respective times.

32. The method of claim 31, further comprising correlating the emitted radiation detected, with the independently actuated excitation sources.

33. The method of claim 31, wherein the independently actuating comprises independently actuating at least two light-emitting diodes.

34. The method of claim 30, further comprising:

actuating a radiation source; and

spectrally separating emission beams from the radiation source to form at least two excitation sources of at least two different respective excitation wavelength ranges.

35. The method of claim 34, wherein the spectrally separating comprises forming at least two excitation sources of at least two different respective excitation wavelength ranges, at two different respective times.

36. The method of claim 34, wherein the spectrally separating comprises forming at least two excitation sources of at least two different respective excitation wavelength ranges, at the same time.

37. The method of claim 34, wherein the spectrally separating comprises filtering emission beams from the radiation source.

38. The method of claim 30, wherein the plurality of dyes comprises at least one energy transfer dye, wherein each energy transfer dye comprises a respective donor dye moiety and a respective acceptor dye moiety, the donor dye moiety absorbs radiation at a different respective peak absorption wavelength range compared to a peak absorption wavelength range of at least one other dye of the at least two dyes, and the acceptor dye moiety emits radiation within a peak emission wavelength range that overlaps with a peak emission wavelength range of at least one other dye of the at least two dyes.

39. The method of claim 30, wherein the nucleic acid sequence-containing sample comprises at least one nucleic acid sequence that reacts with at least one of the dyes of the plurality of dyes.

40. The method of claim 30, wherein the nucleic acid sequence-containing sample comprises at least one DNA molecule that reacts with at least one of the dyes of the plurality of dyes.