Thermal cycling in polymerase chain reactions by thermodynamic methods

• US 20070026444A1
• Filed: 07/27/2006
• Published: 02/01/2007
• Est. Priority Date: 07/27/2005
• Status: Abandoned Application

• Current Assignee: Allan Heff
• Original Assignee: Allan Heff
• Inventors: Heff, Allan
• Application Number:
  US11/494,971
• Publication Number:
  US 20070026444A1
• Time in Patent Office: Days
• US Class Current: 435/6
• CPC Class Codes: B01L 2300/123 Flexible; Elastomeric
• CPC Class Codes: B01L 2300/14 Means for pressure control
• CPC Class Codes: B01L 2300/18 Means for temperature control
• CPC Class Codes: B01L 2300/1883 using thermal insulation
• CPC Class Codes: B01L 7/52 with provision for submitting samples to a predetermined sequence of different temperatures, e.g. for treating nucleic acid samples amplification or hybridisation processes per se C12Q1/68; controlling sequential reactions for synthesis B01J19/0046

Abstract

Systems and methods for rapid thermal cycling in a polymerase chain reaction (“PCR”). Thermodynamic work is performed, directly, or indirectly, or both, on or by analyte and reagents comprising a PCR mixture. The thermodynamic work, which is typically adiabatic, reversible, and isentropic, causes a rapid and uniform change in the temperature of the PCR mixture. Consequently, the denaturing, annealing, and extension steps in the PCR procedure may be performed rapidly, uniformly, and with greater efficiency and higher throughput.

Claims

1. A method for thermal cycling for a polymerase chain reaction (PCR) procedure, the method comprising the steps of:

providing a chamber;

depositing a PCR mixture in the chamber; and

performing first adiabatic work, thereby changing a temperature of the PCR mixture from a first temperature to a second temperature.

2. The method of claim 1, wherein the chamber is adiabatic.

3. The method of claim 1, wherein the PCR mixture comprises a liquid.

4. The method of claim 1, wherein the PCR mixture comprises a gas.

5. The method of claim 1, wherein the PCR mixture comprises particles in suspension.

6. The method of claim 1, wherein the first adiabatic work comprises reversible work.

7. The method of claim 1, wherein the first adiabatic work comprises adiabatic compression of the PCR mixture.

8. The method of claim 7, wherein the adiabatic compression decreases a volume of the chamber and increases a pressure in the chamber.

9. The method of claim 1, wherein the first adiabatic work comprises adiabatic stretching of the chamber.

10. The method of claim 1, wherein the first adiabatic work comprises increasing a surface area of the PCR mixture.

11. The method of claim 1, wherein the first adiabatic work comprises adiabatic polarization.

12. The method of claim 11, wherein the adiabatic polarization comprises adiabatic electrical polarization.

13. The method of claim 11, wherein the adiabatic polarization comprises adiabatic magnetization.

14. The method of claim 1, wherein the first temperature is greater than the second temperature.

15. The method of claim 1, wherein the second temperature is greater than the first temperature.

16. The method of claim 1, wherein the step of changing the temperature of the PCR mixture from the first temperature to the second temperature occurs in less than about one second.

17. The method of claim 1, further comprising the step of denaturing the PCR mixture at the second temperature.

18-48. -48. (canceled)

49. A method for thermal cycling for a polymerase chain reaction (PCR) procedure, the method comprising the steps of:

providing an adiabatic chamber;

depositing a PCR mixture in the chamber at a first temperature;

performing first adiabatic work, thereby raising the temperature of the PCR mixture from the first temperature to a second temperature;

performing second adiabatic work, thereby lowering the temperature of the PCR mixture from the second temperature to a third temperature; and

repeating the two performing steps in sequence until a desired characteristic is obtained for the PCR mixture.

50-72. -72. (canceled)

73. A method for thermal cycling for a polymerase chain reaction (PCR) procedure, the method comprising the steps of:

providing an adiabatic chamber;

depositing a PCR mixture in the chamber at a first temperature;

performing first adiabatic work, thereby raising the temperature of the PCR mixture from the first temperature to a second temperature;

performing second adiabatic work, thereby lowering the temperature of the PCR mixture from the second temperature to a third temperature;

performing third adiabatic work, thereby raising the temperature of the PCR mixture from the third temperature to a fourth temperature; and

repeating the three performing steps in sequence until a desired characteristic is obtained for the PCR mixture.

74-96. -96. (canceled)

97. A system for thermal cycling for a polymerase chain reaction (PCR) procedure, the system comprising:

an elastomeric chamber defining a cavity for receiving a PCR mixture, the elastomeric chamber having a first end and a second end; and

means for cyclically increasing and decreasing the distance between the first end and the second end, thereby changing a temperature of the elastomeric chamber.

98-103. -103. (canceled)