DNA sequencing method using step by step reaction

• US 20070054283A1
• Filed: 02/17/2006
• Published: 03/08/2007
• Est. Priority Date: 09/06/2005
• Status: Abandoned Application

• Current Assignee: Hitachi, Ltd.
• Original Assignee: Hitachi, Ltd.
• Inventors: Kambara, Hideki, Kajiyama, Tomoharu, Kishimoto, Akihiko, Zhou, Guohua
• Application Number:
  US11/356,187
• Publication Number:
  US 20070054283A1
• Time in Patent Office: Days
• US Class Current: 435/6
• CPC Class Codes: C12Q 1/6869 Methods for sequencing
• CPC Class Codes: C12Q 2537/149 Sequential reactions

Abstract

The present invention provides an inexpensive DNA sequencing method with high-sensitivity. The method of the present invention comprising the steps of, adding an given amount of dATP for step by step complementary strand synthesis and subtracting the background luminescence intensity caused by dATP from the measured luminescence intensity to obtain the luminescence intensity involved in complementary strand synthesis.

Claims

1. A method for sequencing a template nucleic acid, comprising the steps of:

adding an amount of dATP that dose not exceed 50 times the amount of a template DNA to a reaction vessel containing the template DNA for step by step complementary strand synthesis; and

subtracting the background luminescence intensity caused by dATP, which is a substrate for luciferase, from the measured luminescence intensity, and

measuring the luminescence intensity involved in the complementary strand synthesis, wherein said luminescence intensity is caused by ATP, which is produced from pyrophosphoric acid generated through the complementary strand synthesis.

2. The method of claim 1, wherein the amount of dATP to be injected into the reaction vessel does not exceed 20 times the amount of the template DNA.

3. The method of claim 1, wherein the luminescence intensity involved in the complementary strand synthesis is measured by detecting a point at which a measured luminescence intensity profile can be suitably discriminated from a background luminescence intensity profile caused by dATP, and removing the luminescence intensity profile up to that point to obtain the luminescence intensity involved in the complementary strand synthesis.

4. The method of claim 1, wherein the luminescence involved in the complementary strand synthesis is measured by:

removing any luminescence intensity within a cut off time period to obtain the luminescence intensity involved in the complementary strand synthesis, wherein the cut off time period indicating the time period required to reach a point at which the luminescence intensity profile can be suitably discriminated from the background luminescence intensity profile.

5. The method of claim 4, wherein the cut off time period is eight seconds.

6. The method of claim 4, wherein the complementary strand synthesis is performed at 30°

C. to 43°

C.

7. The method of claim 1, wherein the luminescence intensity involved in the complementary strand synthesis is measured by injecting dATP into the reaction vessel at least two times, confirming the background luminescence intensity caused by dATP every time dATP is injected, and subtracting the background luminescence intensity caused by dATP from the measured luminescence intensity.

8. The method of claim 1, wherein excessive amounts of dNTP are removed after the complementary strand synthesis.

9. The method of claim 8, wherein the nucleic acid substrates are removed with the aid of an enzyme mixed therewith in the reaction vessel.

10. The method of claim 8, wherein the nucleic acid substrates are removed by replacing a reaction solution with flesh solution after immobilizing a template DNA and a nucleic acid synthase.