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Method and apparatus for performing biosequence similarity searching

  • US 20070067108A1
  • Filed: 02/22/2006
  • Published: 03/22/2007
  • Est. Priority Date: 03/03/2005
  • Status: Active Grant
First Claim
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1. A digital logic circuit for performing biological sequence similarity searching, the circuit comprising:

  • a programmable logic device configured to include a pipeline comprising a Bloom filter stage, the Bloom filter stage being configured to receive a data stream comprising a plurality of biological sequence data strings and filter the biological sequence data stream to identify a plurality of possible matches between the sequence data strings and a plurality of substrings of a query string.

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