Analysis of metabolic activity in cells using extracellular flux rate measurements

• US 20070087401A1
• Filed: 10/10/2006
• Published: 04/19/2007
• Est. Priority Date: 10/17/2003
• Status: Abandoned Application

• Current Assignee: Seahorse Bioscience
• Original Assignee: Seahorse Bioscience
• Inventors: Wu, Min, Neilson, Andy, Ferrick, David, Teich, Jay
• Application Number:
  US11/545,714
• Publication Number:
  US 20070087401A1
• Time in Patent Office: Days
• US Class Current: 435/29
• CPC Class Codes: G01N 33/5008 for testing or evaluating the effect of chemical or biological compounds, e.g. drugs, cosmetics
• CPC Class Codes: G01N 33/5011 for testing antineoplastic activity
• CPC Class Codes: G01N 33/5038 involving detection of metabolites per se
• CPC Class Codes: G01N 33/5076 involving cell organelles, e.g. Golgi complex, endoplasmic reticulum
• CPC Class Codes: G01N 33/5088 of vertebrates

Abstract

Disclosed are methods for non-destructively measuring in vitro the effect on cellular metabolism of the addition to animal cells in culture of a soluble molecule potentially capable of perturbing the biological state of the cells, such as a drug or drug candidate, a toxin, a ligand known or suspected to bind to a cell surface receptor, a nutrient, a cytokine, a growth factor, a chemokine, a metabolism inhibitor or stimulator. Also disclosed are methods for measuring cell viability, vitality, or quality, e.g., in anticipation of the execution of an experiment on the cells. The measurements are done by observing alteration in the rates of consumption or production of extracellular solutes related to aerobic and anaerobic cellular metabolism, such as oxygen, protons, nutrients, carbon dioxide, lactate, or lactic acid. The methods are particularly useful in drug discovery efforts, such as cancer drug discovery and searches for modulators of cellular metabolism.

Claims

1. A method for analysis comprising the steps of:

incubating animal cells under analysis in a medium disposed in at least one of a plurality of wells in a multiwell plate;

adding to the medium to bring into contact with the cells a substance potentially capable of altering cellular metabolism; and

measuring in medium in a well the rate of change in concentration of both an extracellular solute which is a component of cellular aerobic metabolism and an extracellular solute which is a component of cellular anaerobic metabolism.

2. The method of claim 1 wherein the animal cells are primary.

3. The method of claim 1 wherein the animal cells are neoplastic.

4. The method of claim 1 wherein the animal cells are adherent to a substrate.

5. The method of claim 1 wherein the animal cells are in suspension.

6. The method of claim 1 wherein the substance is a drug candidate.

7. The method of claim 1 wherein the substance is a toxin.

8. The method of claim 1 wherein the substance is a ligand known or suspected to bind to a cell surface receptor.

9. The method of claim 1 wherein the measurements are conducted substantially simultaneously in said well.

10. The method of claim 1 comprising the additional steps of:

measuring, in said cell medium prior to addition of said substance, or in the medium of a cell culture in a well separate from said cells under analysis, the rate of change in concentration of the extracellular solute which is a component of cellular aerobic metabolism and the extracellular solute which is a component of cellular anaerobic metabolism, and

comparing the said rates of change prior to and after addition of said substance to assess the effect of said substance on the metabolic activity of said cells.

11. The method of claim 1 comprising the additional step of:

incubating said cells in the presence of said substance for a predetermined time interval prior to measuring said rates of change.

13. The method of claim 1 comprising the additional steps of:

adding to the medium in separate cultures of the same cells in different wells different concentrations of said substance potentially capable of altering cellular metabolism; and

measuring in the cell medium in said separate cultures said rates of change.

14. The method of claim 1 comprising the additional step of:

measuring in the cell medium the rates of change in concentration at different times to obtain a temporal profile of the effect of said substance on said cells.

15. The method of claim 1 comprising adding a fatty acid to a said well to assess a characteristic of fatty acid metabolic activity of a said cell culture.

16. The method of claim 1 wherein said component of cellular aerobic metabolism is extracellular oxygen and said measurement is oxygen consumption rate.

17. The method of claim 1 wherein said component of cellular anaerobic metabolism is extracellular proton concentration and said measurement is the extracellular acidification rate.

18. The method of claim 1 wherein said component of cellular aerobic metabolism is the extracellular concentration of carbon dioxide and said measurement is the extracellular carbon dioxide production rate.

19. The method of claim 1 wherein said component of cellular anaerobic metabolism is the extracellular concentration of either lactic acid or lactate.

20. The method of claim 1 comprising incubating in parallel plural cultures of said animal cells in plural wells, adding to the media in different wells different substances or different concentrations of the same substance, and measuring said rate of change in plural wells.

21. The method of claim 1 wherein the step of measuring the rate of change in concentration in a cell medium comprises the step of temporarily reducing the volume of medium in a cell culture to increase the sensitivity of solute concentration changes.

22. The method of claim 1 comprising, prior to adding said substance, measuring in a cell medium in a well the rate of change in concentration of both an extracellular solute which is a component of cellular aerobic metabolism and an extracellular solute which is a component of cellular anaerobic metabolism, adding to the medium a drug that increases cellular metabolism, and measuring in the medium the rates of change in concentration of plural extracellular solutes, one of which is a component of cellular aerobic metabolism and another of which is a component of cellular anaerobic metabolism, and comparing the measurement, thereby to measure the relative excess metabolic capacity of said cells.

30. The method of claim 15 comprising the additional step of:

incubating said cells in a drug prior to adding a fatty acid to a said well to assess any effect on fatty acid metabolism.

31. The method of claim 30 comprising the additional step of

adding a substance known to inhibit fatty acid transport or oxidation to medium in a said well in order to determine more specifically the effect of said drug.

12. The method of claim 111 comprising the additional steps of:

measuring, in the medium of a cell culture in a well separate from said cells under analysis and treated differently than said cells under analysis, either or both the rate of change in concentration of an extracellular solute which is a component of cellular aerobic metabolism and an extracellular solute which is a component of cellular anaerobic metabolism; and

comparing the measurements of the rate of change in said separate cell culture to said cells under analysis.

23. A method for analysis of cell culture quality comprising the steps of:

measuring in a cell medium the rate of change in concentration of both an extracellular solute which is a component of cellular aerobic metabolism and an extracellular solute which is a component of cellular anaerobic metabolism; and

comparing said measured rates of change to a standard informative of known cell culture respiration rates thereby to assess the respiratory capacity, metabolic rate, or relative pathway utilization of the culture as a measure of cell vitality and cell quality.

24. The method for analysis of claim 23 comprising comparing said measured rates of change to rates measured in a culture comprising a known number of healthy cells of a cell type having inherently comparable metabolic rates or pathway utilization properties to the cells under quality assessment.

25. The method for analysis of claim 23 comprising seeding cells at a predetermined density in a test well prior to said measuring step thereby to enable direct comparison of said measured rates of change to a standard.

26. The method of claim 23 wherein said component of cellular aerobic metabolism is extracellular oxygen and said measurement is oxygen consumption rate.

27. The method of claim 23 wherein said component of cellular anaerobic metabolism is extracellular proton concentration and said measurement is the extracellular acidification rate.

28. The method of claim 23 wherein said component of cellular aerobic metabolism is the extracellular concentration of carbon dioxide.

29. The method of claim 23 wherein said component of cellular anaerobic metabolism is the extracellular concentration of lactic acid or lactate.

32. A method for analysis comprising the steps of:

a) exposing an animal to a test substance;

b) removing cells from said animal;

c) incubating said cells in a medium disposed in at least one of a plurality of wells in a multiwell plate;

d) measuring in the medium in the well the rate of change in concentration of both an extracellular solute which is a component of cellular aerobic metabolism and an extracellular solute which is a component of cellular anaerobic metabolism.

33. The method of claim 32 further comprising the additional steps of:

e) repeating steps b), c), and d), and;

f) comparing said measured rates produced in different cycles.

34. A method for analysis comprising the steps of:

incubating animal cells under analysis in a medium disposed in at least one of a plurality of wells in a multiwell plate;

subjecting said cells to a genetic alteration or environmental stress potentially capable of altering cellular metabolism; and

measuring in medium in a well the rate of change in concentration of both an extracellular solute which is a component of cellular aerobic metabolism and an extracellular solute which is a component of cellular anaerobic metabolism.