System And Method For Cross-Talk Cancellation In A Multilane Fluorescence Detector

• US 20070194249A1
• Filed: 01/25/2007
• Published: 08/23/2007
• Est. Priority Date: 07/29/2004
• Status: Active Grant

• Current Assignee: The Research Foundation for The State University of New York (State University of New York)
• Original Assignee: The Research Foundation for The State University of New York (State University of New York)
• Inventors: Gorbovitski, Boris, Gudkov, Georgiy, Gorfinkel, Vera, Tcherevishnik, Marina, Gavrilov, Dmitri
• Granted Patent: US 7,402,817 B2
• Time in Patent Office: Days
• US Class Current: 250/459.1
• CPC Class Codes: G01J 3/28 Investigating the spectrum using colour filters G01J3/51
• CPC Class Codes: G01J 3/4406 Fluorescence spectrometry
• CPC Class Codes: G01N 2021/6421 Measuring at two or more wavelengths
• CPC Class Codes: G01N 21/6452 Individual samples arranged in a regular 2D-array, e.g. multiwell plates
• CPC Class Codes: G01N 27/44721 by optical means

Abstract

The present invention is directed to a system and method for cross-talk cancellation for multi-lane fluorescence detectors. The invention may be implemented in accordance with a variety of systems, including systems for multi-capillary electrophoresis. The present invention is based on a special calibration procedure for determination of a channel cross-talk matrix and enables an accurate separation of the fluorescence emitted from individual capillary lanes. The proposed method for cross-talk calibration and removal is very useful for design and development of multi-lane single photon counting detection systems.

Claims

1. A method for reducing cross-talk in a multi-channel data acquisition system, which system includes at least a multi-channel photodetector, comprising:

determining a cross-talk matrix for the system;

operating the system to detect data, and

applying the cross-talk matrix to the detected data to reduce or remove channel cross-talk in the detected data.

2. The method of claim 1 wherein the cross-talk matrix is determined theoretically using one or more mathematical formulas which characterize the operation of the system.

3. The method of claim 1 wherein the cross-talk matrix is determined experimentally by calibrating the system by applying known input data and observing the resulting output data.

4. The method of claim 1 wherein the cross-talk matrix is determined experimentally by calibrating one or more subcomponents of the system statically before the subcomponent is installed in the system.

5. The method of claim 1 wherein the cross-talk matrix is determined experimentally by calibrating the system dynamically after the system is assembled.

6. The method of claim 1 wherein the detected data is fluorescence radiation.

7. The method of claim 1 wherein the data is detected by all channels of the system simultaneously.

8. The method of claim 1 wherein the data is detected by all channels of the system sequentially.

9. The method of claim 1 wherein each channel of said multi-channel system detects and distinguishes fluorescence in more than one spectral band.

10. The method of claim 9 wherein the cross talk reduction is individually performed for each of the spectral bands.

11. The method of claim 10 wherein the cross talk reduction is followed by color de-convolution of said fluorescence.

12. The method of claim 1 further comprising the step of applying a non-linearity compensation algorithm to the detected data.

13. A system for reducing cross-talk in multi-channel data acquisition, comprising:

a multi-channel photodetector;

a processor, and a memory coupled to the processor and containing instructions which, when executed by the processor, configure the processor to perform steps comprising;

determining a cross-talk matrix;

operating the system to detect data, and

applying the cross-talk matrix to the detected data to reduce cross-talk in the detected data.

14. The system of claim 13 wherein the cross-talk matrix is determined theoretically using one or more mathematical formulas which characterize the operation of the system.

15. The system of claim 13 wherein the cross-talk matrix is determined experimentally by calibrating the system by applying known input data and observing the resulting output data.

16. The system of claim 13 wherein the cross-talk matrix is determined experimentally by calibrating one or more subcomponents of the system statically before the subcomponent is installed in the system.

17. The system of claim 13 wherein the cross-talk matrix is determined experimentally by calibrating the system dynamically after the system is assembled.

18. A system for multi-capillary data acquisition comprising;

a light source;

at least one multi capillary array positioned to receive light from the light source and filled with a material which produces a useful radiation caused by illumination with said laser source;

a device for separating and identifying more than one spectral band of said useful radiation;

a multi channel photodetector positioned to receive said useful radiation from the multi capillary array;

a processor configured to receive data originating from the photodetector and

a memory coupled to the processor and containing instructions which, when executed by the processor, configure the processor to perform steps comprising;

determining a cross-talk matrix;

operating the system to detect fluorescence data, and

applying the cross-talk matrix to the fluorescence data to reduce cross-talk in the fluorescence data.

19. The system of claim 18 wherein the cross-talk matrix is determined theoretically using one or more mathematical formulas which characterize the operation of the system.

20. The system of claim 18 wherein the cross-talk matrix is determined experimentally by calibrating the system by applying known input data and observing the resulting output data.

21. The system of claim 18 wherein the cross-talk matrix is determined experimentally by calibrating one or more subcomponents of the system statically before the subcomponent is installed in the system.

22. The system of claim 18 wherein the cross-talk matrix is determined experimentally by calibrating the system dynamically after the system is assembled.

23. The method of claim 18 wherein said useful radiation is fluorescence.

24. The method of claim 18 wherein the data is detected by all channels of the system simultaneously.

25. The method of claim 18 wherein the data is detected by all channels of the system sequentially.

26. The method of claim 18 wherein each channel of said multi-channel system detects and distinguishes fluorescence in more than one spectral band.

27. The method of claim 25 wherein the cross talk reduction is individually performed for each of the spectral bands.

28. The method of claim 26 wherein the cross talk reduction is followed by color de-convolution of said fluorescence.

29. The system of claim 18 which perform multicolor DNA sequencing.

30. A method for determining a cross-talk matrix for a multi-capillary data acquisition system, comprising:

applying an input sample to a first capillary;

detecting fluorescence at a first channel which corresponds to the first capillary and at least a second channel;

recording the detected fluorescence data;

processing the recorded data from the first and the second channels to determine what fraction of the fluorescence from the input sample was received by the first channel and what fraction of the fluorescence from the input sample was received by the second channel, and

recording the determined fractions in a column of the cross talk matrix.

31. The method of claim 30 further comprising the step of isolating at least a third channel from fluorescence emitted from at least a second capillary.

32. The method of claim 31 wherein the fluorescence from the second capillary is isolated using a mask.

33. The method of claim 30 where the input sample produces a fluorescence signal with a specific signature which distinguishes this signal from other photo-signals in the data acquisition system.