Automated update of microarray data processing inputs

• US 20070244649A1
• Filed: 04/18/2006
• Published: 10/18/2007
• Est. Priority Date: 04/18/2006
• Status: Abandoned Application

• Current Assignee: Agilent Technologies, Inc.
• Original Assignee: Agilent Technologies, Inc.
• Inventors: Shukla, Amitabh, Zhou, Xiangyang, Medberry, Scott
• Application Number:
  US11/406,441
• Publication Number:
  US 20070244649A1
• Time in Patent Office: Days
• US Class Current: 702/19
• CPC Class Codes: G16B 25/00 ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
• CPC Class Codes: G16B 50/00 ICT programming tools or database systems specially adapted for bioinformatics
• CPC Class Codes: G16B 50/10 Ontologies; Annotations
• CPC Class Codes: G16B 50/30 Data warehousing; Computing architectures

Abstract

A method and device for supplying array data processing inputs, such as design files and protocols, for analyzing a microarray are disclosed herein. The user is able to access from a client computer, without the user specifying the network location, a storage unit at a predetermined network location, and receive into the computer from the storage unit through the network connection the array data processing inputs.

Claims

1. A method of supplying an array data processing input for analyzing a microarray, the method comprising:

from a computer, accessing a storage unit at a predetermined network location via a network connection without a user of the computer specifying the network location; and

receiving into the computer from the storage unit through the network connection the array data processing input.

2. The method of claim 1, wherein retrieving the array data processing input comprises retrieving array design information, array annotation or a processing protocol for the microarray.

3. The method of claim 1, further comprising comparing an update status indicator of the array data processing input at the network location with an update status indicator of array data processing input at the computer, and retrieving the array data processing input at the network location only when the result of the comparison meets a predetermined condition.

4. The method of claim 3, wherein each update status indicators comprises a version number or an array data processing input release date.

5. The method of claim 1, further comprising authenticating the user for the network location before permitting the retrieval of the array data processing input from the network location.

6. The method of claim 1, further comprising authenticating the user for the array data processing input at the network location before permitting the retrieval of the array data processing input from the network location.

7. The method of claim 1, further comprising providing at the network location a plurality of array data processing inputs, each having associated with it a respective update status indicator, and permitting the user to selectively retrieve at least one of the plurality of array data processing inputs.

8. A computer-readable medium having stored thereon computer-readable codes that, when executed by a computer, causes the computer to access a storage unit at a predetermined network location via a network connection without a user of the computer specifying the network location;

and receive into the computer from the storage unit through the network connection the array data processing input.

9. The computer-readable medium of claim 8, wherein when executed by the computer, the computer-readable codes further causes the computer to process data of the microarray using the retrieved array data processing inputs.

10. The computer-readable medium of claim 8, wherein the array data processing input comprises retrieving array design information, array annotation or processing protocol for the microarray.

11. The computer-readable medium of claim 9, wherein when executed by the computer, the codes further cause the computer to compare an update status indicator of the array data processing input at the network location with an update status indicator of array data processing input at the computer, and retrieve the array data processing input at the network location only when the result of the comparison meets a predetermined condition.

12. The computer-readable medium of claim 8, wherein when executed by the computer, the codes further cause the computer to authenticate the user for the network location before permitting the retrieval of the array data processing input from the network location.

13. The computer-readable medium of claim 8, wherein when executed by the computer, the codes further cause the computer to authenticate the user for the array data processing input at the network location before permitting the retrieval of the array data processing input from the network location.

14. The computer-readable medium of claim 8, wherein when executed by the computer, the codes further cause the computer to access a plurality of array data processing inputs at the network location, each having associated with it a respective update status indicator, and selectively retrieve at least one of the plurality of array data processing inputs.

15. A device for analyzing a microarray, the device comprising

a computer having a network interface adapted to enable the computer to access a storage unit via a network connection;

and

a computer-readable medium in data communication with the computer, the medium having stored thereon codes that, when executed by the computer, causes the computer to retrieve to the computer, through the network connection, the array data processing input from the network location without a user of the computer specifying the network location.

16. The device of claim 15, wherein the array data processing input comprises retrieving array design information, array annotation or processing protocol for the microarray.

17. The method of claim 15, wherein the codes, when executed by the computer, further cases the computer to compare an update status indicator of the array data processing input at the network location with an update status indicator of array data processing input at the computer, and retrieve the array data processing input at the network location only when the result of the comparison meets a predetermined condition.

18. The method of claim 17, wherein the method further comprising authenticating the user for the array data processing input at the network location before permitting the retrieval of the array data processing input from the network location.