Method and apparatus for deriving the genome of an individual
First Claim
1. A method for deriving a genome of an individual, comprising the steps of:
- accessing a selector for an individual and a reference template for a group genome, the selector comprising a locus value and a base value; and
processing the selector and the reference template to derive a sequence representative of the genome of the individual.
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Abstract
A computer-based method is provided for deriving a genome of an individual. The method comprises the steps of accessing a selector for an individual and a reference template for a group genome, the selector comprising a locus value and a base value; and processing the selector and the reference template to derive a sequence representative of the genome of the individual. The reference template preferably comprises data components representing a probability of occurrence of a base value. The probability of occurrence is based on base value occurrences at corresponding locus values in the group genome. The method of the present invention further comprises computing a base value from the data component in the reference template, for base values not in the selector.
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Citations
20 Claims
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1. A method for deriving a genome of an individual, comprising the steps of:
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accessing a selector for an individual and a reference template for a group genome, the selector comprising a locus value and a base value; and
processing the selector and the reference template to derive a sequence representative of the genome of the individual. - View Dependent Claims (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12)
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13. A system comprising:
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a memory that stores computer-readable code; and
a processor operatively coupled to the memory, the processor configured to implement the computer-readable code, the computer-readable code configured to;
access a reference template for a group genome and a selector for an individual, the selector comprising a locus value and a base value; and
process the reference template and the selector to derive a sequence representative of the genome of the individual. - View Dependent Claims (14, 15, 16)
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17. An article of manufacture comprising:
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a computer-readable medium having computer-readable code embodied thereon, the computer-readable code comprising;
a step to access a reference template for a group genome and a selector for an individual, the selector comprising a locus value and a base value; and
a step to process the reference template and the selector to derive a sequence representative of the genome of the individual. - View Dependent Claims (18, 19, 20)
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Specification