Glyoxylate assays and their use of inden tifying natural amidated compounds

• US 20080227134A9
• Filed: 01/17/2007
• Published: 09/18/2008
• Est. Priority Date: 09/16/2005
• Status: Abandoned Application

• Current Assignee: Unigene Laboratories Incorporated
• Original Assignee: Unigene Laboratories Incorporated
• Inventors: Consalvo, Angelo, Mehta, Nozer, Merkler, Dave, Carpenter, Sarah, Miller, Duncan
• Application Number:
  US11/654,211
• Publication Number:
  US 20070254328A1
• Time in Patent Office: Days
• US Class Current: 435/25
• CPC Class Codes: C12Q 1/26 involving oxidoreductase
• CPC Class Codes: G01N 33/5308 for analytes not provided for elsewhere, e.g. nucleic acids, uric acid, worms, mites

Abstract

Methods for detecting and assaying for glyoxylate, include enzyme-based assays and/or assays for hydrogen peroxide following liberation of hydrogen peroxide from glyoxylate, are disclosed. In some embodiments, the invention is directed to methods for assaying for glyoxylate produced by the reaction of peptidylglycine alpha-amidating monooxygenase (PAM). The subject invention also concerns methods for assaying for the enzyme peptidylglycine alpha-amidating monooxygenase and/or its substrates. The detection of glyoxylate is indicative of the presence of PAM and/or its substrates. The subject invention also concerns methods for screening for peptide hormones, amidated fatty acids, any N-acyl-glycine or N-aryl-glycine conjugated molecule, and generally compounds having a glycine reside in free acid form and attached to a carbonyl group.

Claims

1. A method for detecting the presence of glyoxylate in a test sample comprising the steps of:

(A) contacting said test sample with one or more agents that convert glyoxylate, directly or indirectly, to hydrogen peroxide as one reaction product; and

(B) assaying for the presence of hydrogen peroxide.

2. The method of claim 1 wherein hydrogen peroxide is detected by a fluorescent assay.

3. The method of claim 2 wherein said fluorescent assay comprises reacting a fluorophore with a sample suspected of containing hydrogen peroxide to form a peroxide-dependent fluorescent product when hydrogen peroxide is present.

4. The method of claim 3, wherein said fluorophore is amplex red and said fluorescent product is resorufin.

5. The method of claim 1 wherein said conversion of glyoxylate to hydrogen peroxide is performed enzymatically.

6. The method of claim 4 wherein said conversion of glyoxylate to hydrogen peroxide is performed in the presence of glyoxal oxidase.

7. The method of claim 4 wherein said conversion of glyoxylate to hydrogen peroxide is performed in the presence of glycolate oxidase.

8. The method of claim 1 wherein hydrogen peroxide is detected by a luminescent assay.

9. The method of claim 8 wherein said luminescent assay comprises reacting luminol with a sample suspected of containing hydrogen peroxide.

10. The method of claim 9 wherein luminol is reacted at basic pH and in the presence of an oxidative catalyst.

11. The method of claim 10 wherein said oxidative catalyst is horseradish peroxidase.

12. The method of claim 9 wherein luminol is reacted at a pH no lower than 10.5.

13. The method of claim 8 wherein said conversion of glyoxylate to hydrogen peroxide is performed enzymatically.

14. The method of claim 13 wherein said conversion of glyoxylate to hydrogen peroxide is performed in the presence of glyoxal oxidase.

15. The method of claim 13 wherein said conversion of glyoxylate to hydrogen peroxide is performed in the presence of glycolate oxidase.

16. A method for detecting the presence of compounds having a glycine residue, in free acid form and attached to a carbonyl group, said method comprising the steps of:

(A) contacting a sample suspected of containing said glycine compounds with either (i) peptidylglycine alpha-amidating monooxygenase, (ii) a combination of peptidylglycine alpha-hydroxylating monooxygenase and peptidyl alpha-hydroxyglycine alpha-amidating lyase or (iii) a combination of peptidylglycine alpha-hydroxylating monooxygenase and a Lewis base;

to form an amidated compound and glyoxylate;

(B) assaying for the presence of glyoxylate.

17. The method of claim 16 wherein said assay for glyoxylate comprises the steps of:

(A) contacting said test sample with one or more agents that convert glyoxylate, directly or indirectly, to hydrogen peroxide as one reaction product; and

(B) assaying for the presence of hydrogen peroxide.

18. The method of claim 17 wherein hydrogen peroxide is detected by a fluorescent assay.

19. The method of claim 18 wherein said fluorescent assay comprises reacting a fluorophore with a sample suspected of containing hydrogen peroxide to form a peroxide-dependent fluorescent product when hydrogen peroxide is present.

20. The method of claim 19 wherein said flurophore is amplex red, and said fluorescent product is resorufin.

21. The method of claim 17 wherein said conversion of glyoxylate to hydrogen peroxide is performed enzymatically.

22. The method of claim 21 wherein said conversion of glyoxylate to hydrogen peroxide is performed in the presence of glyoxal oxidase.

23. The method of claim 21 wherein said conversion of glyoxylate to hydrogen peroxide is performed in the presence of glycolate oxidase.

24. The method of claim 17 wherein hydrogen peroxide is detected by a luminescent assay.

25. The method of claim 24 wherein said luminescent assay comprises reacting luminol with a sample suspected of containing hydrogen peroxide.

26. The method of claim 25 wherein luminol is reacted at basic pH and in the presence on oxidative catalyst.

27. The method of claim 26 wherein oxidative catalyst is horseradish peroxidase.

28. The method of claim 25 wherein luminol is reacted at a pH no lower than 10.5.

29. The method of claim 24 wherein said conversion of glyoxylate to hydrogen peroxide is performed enzymatically.

30. The method of claim 29 wherein said conversion of glyoxylate to hydrogen peroxide is performed in the presence of glyoxal oxidase.

31. The method of claim 29 wherein said conversion of glyoxylate to hydrogen peroxide is performed in the presence of glycolate oxidase.

32. A method of identifying amidated hormones or amidated fatty acids comprising the steps of:

(A) incubating cells suspected of producing said hormones or fatty acids;

(B) fractionating compounds produced by said cells into a series of fractions for further analysis;

(C) contacting a fraction from step (B) with either (i) peptidylglycine alpha-amidating monooxygenase, (ii) a combination of peptidylglycine alpha-hydroxylating monooxygenase and peptidyl alpha-hydroxyglycine alpha-amidating lyase or (iii) a combination of peptidylglycine alpha-hydroxylating monooxygenase and a Lewis base;

to form an amidated compound and glyoxylate when said fraction includes a compound having a glycine residue, in free acid form and attached to a carbonyl group; and

(D) Assaying the product of step (C) for the presence of glyoxylate.

33. The method of claim 32 wherein said assay for glyoxylate comprises the steps of:

(a) contacting said test sample with one or more agents that convert glyoxylate, directly or indirectly, to hydrogen peroxide as one reaction product; and

(b) assaying for the presence of hydrogen peroxide.

34. The method of claim 32 wherein said incubation occurs in the presence of an inhibitor of peptidylglycine alpha-amidating monooxygenase.

35. The method of claim 32 wherein a secretagogue is utilized to increase secretion into culture media of compounds produced by said cells.

36. The method of claim 32 wherein step (C) is performed in the absence of catalase.

37. The method of claim 36 wherein step (C) is performed in the presence of either a keto-acid or horseradish peroxidase.

38. The method of claim 32 wherein step (C) is performed in the absence of ascorbate.

39. The method of claim 38 wherein step (C) is performed in the presence of catechol.

40. The method of claim 32 wherein step (C) is performed in the presence of ascorbate, and ascorbate is deactivated or removed prior to step (D).

41. The method of claim 39 wherein said assay for glyoxalate is a fluorescent assay.

42. The method of claim 40 wherein said assay for glyoxalate is a luminescent assay.

43. The method of claim 32 wherein compounds in any fraction that, following step (D), tests positive for glyoxylate, are analyzed for characteristics of amidated peptide hormone precursors, said characteristics being selected from the group consisting of (1) having a C-terminal glycine in its amino acid sequence and (2) having, in its corresponding nucleotide sequence, a signal region in reading frame with a peptide coding region that either terminates with C-terminal glycine or has a glycine followed by single or multiple basic amino acids immediately downstream that serve as post-translational cleavage sites.

44. The method of claim 32 wherein, for any first sample of a fraction that, following step (D), tests positive for glyoxylate, a second sample of that fraction is subjected to steps (A) and (B), with the product of step (B) being assayed for the presence of glyoxylate to determine if the amount of glyoxalate detected for said second sample is desirably lower than the amount of glyoxalate detected for said first sample.