Method for increasing the speed of nucleic acid amplification reactions

• US 20080275229A1
• Filed: 10/19/2007
• Published: 11/06/2008
• Est. Priority Date: 05/02/2007
• Status: Abandoned Application

• Current Assignee: Spartan Bioscience, Inc.
• Original Assignee: Spartan Bioscience, Inc.
• Inventors: Lem, Paul, Shayanpour, Alan, Harder, Chris, Fournier, Sebastien, Ritz, Caitlin
• Application Number:
  US11/975,439
• Publication Number:
  US 20080275229A1
• Time in Patent Office: Days
• US Class Current: 536/25.42
• CPC Class Codes: C12Q 1/6848 characterised by the means for preventing contamination or increasing the specificity or sensitivity of an amplification reaction
• CPC Class Codes: C12Q 2527/101 Temperature
• CPC Class Codes: C12Q 2527/15 Gradients

Abstract

The speed of a nucleic acid amplification reaction, such as the Polymerase Chain Reaction (PCR), can be increased by setting the temperature of heat sources above and below the desired denaturation, annealing, and extension temperatures. The reaction mixture is only contacted with the heat sources long enough for the desired temperatures to be reached.

Claims

1. A method of performing a nucleic acid amplification reaction where a reaction mixture is subjected sequentially to a selected denaturation temperature which is provided by a heat source and to a selected annealing, and/or extension temperature, said method comprising the step of moving said reaction mixture out of the influence of said heat source once said temperature is higher than said desired denaturation temperature and is lower than said desired annealing, and/or extension temperature.

2. The method according to claim 1, includes establishing a non-uniform temperature gradient across said reaction mixture.

3. The method according to claim 1, including the steps:

of first setting the temperature of a first heat source higher than the desired denaturation temperature, and setting the temperature of a second heat source lower than the desired annealing, and/or extension temperatures;

bringing the temperature of said reaction mixture to the desired denaturation temperature through the influence of said first heat source, and moving said reaction mixture out of the influence of said first heat source once the desired denaturation temperature is reached.

4. The method according to claim 2, including the steps:

of first setting the temperature of a first heat source higher than the desired denaturation temperature, and setting the temperature of a second heat source lower than the desired annealing, and/or extension temperatures;

bringing the temperature of said reaction mixture to the desired denaturation temperature through the influence of said first heat source, and moving said reaction mixture out of the influence of said first heat source once the desired denaturation temperature is reached.

5. The method according to claim 3, wherein the reaction mixture is brought to the desired denaturation temperature by direct contact with the heat source.

6. The method according to claim 4, wherein the reaction mixture is brought to the desired denaturation temperature by direct contact with the heat source.

7. The method according to claim 3, including the steps of:

setting the temperature of said first heat source to about 15°

C. higher than said desired denaturation temperature; and

subjecting said reaction mixture to the influence of said temperature;

whereby the temperature of said reaction mixture is brought up to about 95°

C. about 13 seconds.

8. The method according to claim 4, including the steps of:

setting the temperature of said first heat source to about 15°

C. higher than said desired denaturation temperature; and

subjecting said reaction mixture to the influence of said temperature;

whereby the temperature of said reaction mixture is brought up to about 95°

C. about 13 seconds.

9. The method according to claim 5, including the steps of:

setting the temperature of said first heat source to about 15°

C. higher than said desired denaturation temperature; and

subjecting said reaction mixture to the influence of said temperature;

whereby the temperature of said reaction mixture is brought up to about 95°

C. about 13 seconds.

10. The method according to claim 6, including the steps of:

setting the temperature of said first heat source to about 15°

C. higher than said desired denaturation temperature; and

subjecting said reaction mixture to the influence of said temperature;

whereby the temperature of said reaction mixture is brought up to about 95°

C. about 13 seconds.

11. The method according to claim 7, wherein the temperature of said reaction mixture is caused to increase by about 23°

C. (65°

C. to 88°

C.) in only 13 seconds, i.e., at about 1.8 C/second.

12. The method according to claim 8, wherein the temperature of said reaction mixture is caused to increase by about 23°

C. (65°

C. to 88°

C.) in only 13 seconds, i.e., at about 1.8 C/second.

13. The method according to claim 9, wherein the temperature of said reaction mixture is caused to increase by about 23°

C. (65°

C. to 88°

C.) in only 13 seconds, i.e., at about 1.8 C/second.

14. The method according to claim 10, wherein the temperature of said reaction mixture is caused to increase by about 23°

C. (65°

C. to 88°

C.) in only 13 seconds, i.e., at about 1.8 C/second.

15. The method according to claim 1, including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.

16. The method according to claim 2, including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.

17. The method according claim 3, including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.

18. The method according to claim 4 including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.

19. The method according to claim 5, including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.

20. The method according to claim 6, including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.

21. The method according to claim 7, including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.

22. The method according to claim 8, including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.

23. The method according to claim 9, including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.

24. The method according to claim 10, including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.

25. The method according to claim 11, including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.

26. The method according to claim 12, including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.

27. The method according to claim 13, including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.

28. The method according to claim 14 including:

setting the temperature of a second heat source to about 10°

C. lower than the desired annealing, and/or extension temperatures; and

subjecting the reaction mixture to the influence of said temperature for about 18 seconds, whereby the temperature of said reaction mixture is brought down to about 65°

C.