PROBE, PROBE SET, PROBE CARRIER, AND TESTING METHOD

• US 20080293061A1
• Filed: 05/13/2008
• Published: 11/27/2008
• Est. Priority Date: 05/14/2007
• Status: Abandoned Application

• Current Assignee: Canon Kabushiki Kaisha (Canon Inc.)
• Original Assignee: Canon Kabushiki Kaisha (Canon Inc.)
• Inventors: Shimizu, Nobuyoshi, Tomatsu, Nobuhiro, Fukui, Toshifumi, Takayanagi, Atsushi
• Application Number:
  US12/119,897
• Publication Number:
  US 20080293061A1
• Time in Patent Office: Days
• US Class Current: 435/6.13
• CPC Class Codes: C12Q 1/689 for bacteria

Abstract

A probe, a set of probes, and a probe carrier on which the probe or the set of probes is immobilized, are provided for classification of fungus species. The probe or the set of probes is capable of collectively detecting fungus of the same species and distinguishingly detecting those fungus from fungus of other species. The probe is an oligonucleotide probe for detecting a pathogenic fungus DNA and includes at least one of base sequences of SEQ ID NOS. 1 to 4 and mutated sequences thereof.

Claims

1. A probe for detecting a DNA of Candida albicans which is a pathogenic fungus, comprising one of the following base sequences (1) to (5):

(1) tctttgaaacaaacttgctttggcgg (SEQ ID NO.

     1) or a complementary sequence thereof;

(2) ccgccagaggtctaaacttacaacc (SEQ ID NO.

     2) or a complementary sequence thereof;

(3) gacggtagtggtaaggcgggat (SEQ ID NO.

     3) or a complementary sequence thereof;

(4) ggcggtaacgtccaccacgtat (SEQ ID NO.

     4) or a complementary sequence thereof; and

(5) a mutated sequence which was obtained by deletion, substitution, or addition of a base on the sequences of SEQ ID NOS. 1 to 4 or the complementary sequences thereof in a range that the mutated sequence retains a function as the probe.

5. A kit for detecting a DNA of Candida albicans, comprising:

the probe according to claim 1; and

a reagent for detecting a reaction of a probe with a target nucleic acid.

2. A probe set for detecting a DNA of Candida albicans which is a pathogenic fungus, comprising at least two probes of the following items (A) to (P):

(A) a probe including a base sequence represented by tctttgaaacaaacttgctttggcgg (SEQ ID NO.

     1);

(B) a probe including a base sequence represented by ccgccagaggtctaaacttacaacc (SEQ ID NO.

     2);

(C) a probe including a base sequence represented by gacggtagtggtaaggcgggat (SEQ ID NO.

     3);

(D) a probe including a base sequence represented by ggcggtaacgtccaccacgtat (SEQ ID NO.

     4);

(E) a probe including a complementary sequence of SEQ ID NO. 1;

(F) a probe including a complementary sequence of SEQ ID NO. 2;

(G) a probe including a complementary sequence of SEQ ID NO. 3;

(H) a probe including a complementary sequence of SEQ ID NO. 4;

(I) a probe including a mutated sequence obtained by deletion, substitution or addition of a base on SEQ ID NO. 1 in a range that the mutated sequence retains a function as the probe;

(J) a probe including a mutated sequence obtained by deletion, substitution or addition of a base on SEQ ID NO. 2 in a range that the mutated sequence retains the function as the probe;

(K) a probe including a mutated sequence obtained by deletion, substitution or addition of a base on SEQ ID NO. 3 in a range that the mutated sequence retains the function as the probe;

(L) a probe including a mutated sequence obtained by deletion, substitution or addition of a base on SEQ ID NO. 4 in a range that the mutated sequence retains the function as the probe;

(M) a probe including a mutated sequence obtained by deletion, substitution or addition of a base on the complementary sequence of SEQ ID NO. 1 in a range that the mutated sequence retains the function as the probe;

(N) a probe including a mutated sequence obtained by deletion, substitution or addition of a base on the complementary sequence of SEQ ID NO. 2 in a range that the mutated sequence retains the function as the probe;

(O) a probe including a mutated sequence obtained by deletion, substitution or addition of a base on the complementary sequence of SEQ ID NO. 3 in a range that the mutated sequence retains the function as the probe; and

(P) a probe including a mutated sequence obtained by deletion, substitution or addition of a base on the complementary sequence of SEQ ID NO. 4 in a range that the mutated sequence retains the function as the probe.

3. A probe carrier, comprising a plurality of probes which form the probe set according to claim 2, wherein:

the plurality of probes are each immobilized on a carrier; and

the plurality of probes are arranged at intervals.

4. A method of detecting a DNA of Candida albicans in a sample by using a probe carrier, comprising:

(i) reacting the sample with the probe carrier according to claim 3; and

(ii) detecting a reaction intensity of a probe on the probe carrier reacted with a nucleic acid contained in the sample.

6. A kit for detecting a DNA of Candida albicans, comprising:

a plurality of probes in the probe set according to claim 2; and

a reagent for detecting a reaction of a probe with a target nucleic acid.

7. A kit for detecting a DNA of Candida albicans, comprising:

the probe carrier according to claim 3; and

a reagent for detecting a reaction of a probe with a target nucleic acid.