Method for maintaining pluripotency of stem/progenitor cells

• US 20090018059A1
• Filed: 09/02/2005
• Published: 01/15/2009
• Est. Priority Date: 09/03/2004
• Status: Abandoned Application

• Current Assignee: Agency For Science Technology and Research (Government of Singapore)
• Original Assignee: Agency For Science Technology and Research (Government of Singapore)
• Inventors: Ng, Huck Hui, Robson, Paul, Rodda, David
• Application Number:
  US11/661,957
• Publication Number:
  US 20090018059A1
• Time in Patent Office: Days
• US Class Current: 514/1.100
• CPC Class Codes: A61P 35/00 Antineoplastic agents
• CPC Class Codes: C12N 15/113 Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing when used in plants C12N15/8218
• CPC Class Codes: C12N 2310/13 Decoys
• CPC Class Codes: C12N 2310/14 interfering N.A.
• CPC Class Codes: C12N 2501/60 Transcription factors
• CPC Class Codes: C12N 2510/00 Genetically modified cells
• CPC Class Codes: C12N 5/0606 Pluripotent embryonic cells, e.g. embryonic stem cells [ES] embryonic germ cells C12N5/0611, induced pluripotent stem cells C12N5/0696

Abstract

The present invention relates to a method for maintaining pluripotency and/or self-renewing characteristics of stem/progenitor cells. The invention also relates to a method for modulating gene expression in a cell. The methods include contacting at least two transcription factors, or a functional fragment thereof, with the promoter region of the nanog gene. One of the at least two transcription factors is selected from the POU- and homeo-domain-containing transcription factors. Another of the at least two transcription factors is selected from the HMG domain-containing transcription factors. The method further comprises allowing the at least two transcription factors to form a complex with a specific binding element within the nanog promoter. The complex thus formed regulates nanog gene expression by mediating transcriptional activation.

Claims

1. A method for maintaining pluripotency and/or self-renewing characteristics of stem/progenitor cells, the method comprising:

(a) contacting at least two transcription factors, or a functional fragment thereof, with the promoter region of the nanog gene, wherein one of the at least two transcription factors is selected from the POU- and homeo-domain-containing transcription factors, and wherein another of the at least two transcription factors is selected from the HMG domain-containing transcription factors; and

(b) allowing said at least two transcription factors to form a complex with a specific binding element within the nanog promoter, said complex regulating nanog gene expression by mediating transcriptional activation.

2. The method of claim 1, wherein the homeo-domain of said POU- and homeo-domain-containing transcription factor is a POU-homeo-domain.

3. The method of claim 1, or claim further comprising detecting said complex formation.

4. The method of claim 1, further comprising:

(c) measuring nanog gene expression in the stem/progenitor cells.

5. The method of claim 4, further comprising:

(d) comparing the result of the measurement obtained in step (c) with that of a control measurement.

6. The method of claim 1, wherein the at least two transcription factors form a heteromeric complex on the nanog promoter.

7. The method of claim 6, wherein the heteromeric complex is a heterodimer comprised of two transcription factors.

8. The method of claim 1, wherein the at least two transcription factors act synergistically to activate the transcription of the nanog gene.

9. The method of claim 1, wherein the POU- and homeo-domain-containing transcription factor is Oct4.

10. The method of claim 1, wherein the HMG-domain-containing transcription factor is Sox2.

11. The method of claim 1, wherein the at least two transcription factors bind to a composite binding element within the nanog promoter, with said POU- and homeo-domain-containing transcription factor binding to one part of the composite element, and said HMG domain-containing transcription factor binding to another part of the composite element.

12. The method of claim 11, wherein the composite binding element is a bipartite binding site.

13. The method of claim 12, wherein the composite binding element is an Oct4/Sox2 binding site.

14. The method of claim 13, wherein the Oct4 binding site and the Sox2 binding site are immediately adjacent to each other.

15. The method of claim 1, wherein the stem/progenitor cells are embryonic stem cells.

16. The method of claim 15, wherein the embryonic stem cells are of human origin.

17. The method of claim 1, further comprising contacting at least a third transcription factor with the nanog gene, wherein said third transcription factor is selected from the group consisting of a member of the SMAD protein family, a member of the AP1 family, a hand 1 transcription factor and a hand 1 related transcription factor.

18. The method of claim 1, wherein each of the at least two transcription factors bind to a binding site located within the region of the respective nanog gene that corresponds to the region of the human nanog gene that comprises sequence positions −

289 to +117 of the human nanog gene.

19. The method of claim 18, wherein the binding site for each of the three transcription factors are located within the region of the nanog gene that corresponds to the region of the human nanog gene that comprises the sequence positions −

212 to −

119 of the human nanog gene.

42. The method of claim 3, wherein the detection is performed by a suitable spectroscopic, photochemical, photometric, fluorometric, radiological, enzymatic or thermodynamic method, or is based on cellular effects.

20. A method for modulating gene expression in a cell, the method comprising:

(a) contacting at least two transcription factors or a functional fragment thereof with the promoter region of the nanog gene, wherein one of the at least two transcription factors is selected from the POU- and homeo-domain-containing transcription factors, and wherein another of the at least two transcription factors is selected from the HMG domain-containing transcription factors; and

(b) allowing said at least two transcription factors to form a complex with a specific binding element within the nanog promoter, said complex regulating gene expression by mediating transcriptional activation.

21. The method of claim 20, wherein the homeo-domain of said POU- and homeo-domain-containing transcription factor is a POU-homeo-domain.

22. The method of claim 20, wherein the cell is a stem/progenitor cell.

23. The method of claim 20, wherein the cell is an embryonic stem cell.

24. The method of claim 20, wherein the cell is a cancer cell.

25. The method of claim 24, wherein the cancer is a teratoma.

26. The method of claim 20, wherein the cell is a recombinant cell comprising a nanog promoter and expressing at least two transcription factors, wherein one of the at least two transcription factors is selected from the POU- and homeo-domain-containing transcription factors, and wherein another of the at least two transcription factors is selected from the HMG domain-containing transcription factors, or respectively a functional fragment thereof.

27. The method of claim 20, wherein the gene, the expression of which is modulated, is selected from the group consisting of a reporter gene, a drug resistance gene, an apoptosis gene (so-called ‘

death’

gene), or and any other gene with desirable expression in a respective cell.

28. The method of claim 20, further comprising contacting said transcription factors with a compound that modulates the complex formation of said at least two transcription factors with said element of the nanog promoter.

29. The method of claim 28, wherein the complex formation of said at least two transcription factors or a functional fragment thereof with said element of the nanog promoter is reduced by means of a nucleic acid molecule.

30. The method of claim 29, wherein the nucleic acid molecule is RNA or DNA.

31. The method of claim 30, wherein the nucleic acid molecules is selected from the group consisting of an aptamer, a micro RNA (miRNA) molecule, a small interfering RNA (si-RNA) molecule or and a repeat-associated small interfering RNA (rasiRNA) molecule.

32. The method of claim 31, wherein the nucleic acid molecules is a si-RNA molecule transcribed from the sequence of SEQ ID NO:

31 and/or a si-RNA molecule transcribed from the sequence of SEQ ID NO;

32.

33. The method of claim 27, wherein the method is an in-vitro method for the identification of suitable compounds that modulate said complex formation.

34. The method of claim 33 for the in-vitro screening for potential compounds that are useful for removing or differentiating a cell due to their inhibition of the complex formation of said at least two transcription factors, or a functional fragment thereof, and said element of the nanog promoter, comprising the simultaneous screening of compound libraries on multiple-well microplates using automated work stations.

35. The method of claim 20, wherein said cell is comprised in a mammal and wherein the method is an in-vivo method.

36. The method of claim 35, wherein the mammal is selected from the group consisting of a rat, a mouse, a dingo, a cow, a goat, a pig, a chimpanzee, a macaque and a human.

37. The method of claim 35, comprising administering a compound (currently amended) that modulates the formation of said complex between the at least two transcription factors and the binding region of the nanog promoter.

38. The method of claim 35 for or in the treatment of teratoma.

39. The method of claim 20, further comprising detecting said complex formation.

40. The method of claim 20, further comprising (c) measuring nanog gene expression in the cell.

41. The method of claim 40, further comprising:

(d) comparing the result of the measurement obtained in step (c) with that of a control measurement.

43. The method of claim 20, wherein the at least two transcription factors act synergistically to activate the transcription of the nanog gene.

44. The method of claim 20, wherein the POU- and homeo-domain-containing transcription factor is Oct4.