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Compositions and Methods for Binding Lysophosphatidic Acid

  • US 20090136483A1
  • Filed: 05/29/2008
  • Published: 05/28/2009
  • Est. Priority Date: 05/30/2007
  • Status: Active Grant
First Claim
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1. A compound selected from the group consisting of:

  • a. an isolated anti-LPA agent, which agent binds lysophosphatidic acid (LPA) under physiological conditions and comprises at least one CDR peptide having an amino acid sequence that has a sequence identity of at least 65 percent, optionally a sequence identity of at least 80 percent, at least 90 percent, at least 95 percent, and 100 percent identity with an amino acid sequence selected from the group consisting of SEQ ID NOs;

    56, 57, 58, 59, 60, 61, 62, 69, 70, 71, 72, 73, 74, 81, 82, 83, 84, 85, 86, 93, 94, 95, 96, 97, 98, 105, 106, 107, 108, 109, 110, and 111, wherein the anti-LPA agent is optionally;

    (i) selected from the group consisting of an antibody and a non-antibody-derived moiety;

    (ii) selected from the group consisting of a chimeric antibody, a humanized antibody, a full-length antibody, an affinity matured antibody, an antibody derivative or an antibody fragment;

    (iii) an antibody comprised of two heavy chains and two light chains, wherein each heavy chain independently comprises an amino acid sequence selected from the group consisting of SEQ ID NO;

    114, 118, 122, 126 and 130 and each light chain independently comprises an amino acid sequence selected from the group consisting of SEQ ID NO;

    115, 119, 123, 127, and 131;

    (iv) combined with a second agent which is optionally selected from the group consisting of an antibody, an antibody fragment, an antibody derivative, and an antibody variant, wherein the second agent optionally comprises a binding moiety that binds a molecule other than LPA, wherein the anti-LPA agent and the second agent are optionally linked, optionally by a covalent linkage; and

    (v) conjugated to a moiety selected from the group consisting of a polymer, a radionuclide, a chemotherapeutic agent, and a detection agent;

    b. an isolated nucleic acid molecule comprising;

    (i) a sequence of nucleotide residues that encodes at least a first CDR peptide, and optionally a second CDR peptide or second and third CDR peptides, wherein the first, second, and third CDR peptides each independently have an amino acid sequence that has a sequence identity selected from the group consisting of at least 65 percent, at least 80 percent, at least 90 percent, at least 95 percent, and 100 percent identity with an amino acid sequence selected from the group consisting of SEQ ID NOs;

    56, 57, 58, 62, 69, 70, 71, 81, 82, 83, 93, 94, 95, 105, 106, 107, and 111; and

    (ii) a sequence of nucleotide residues that encodes at least a first CDR peptide, and optionally a second CDR peptide or second and third CDR peptides, wherein the first, second, and third CDR peptides each independently have an amino acid sequence that has a sequence identity selected from the group consisting of at least 65 percent, at least 80 percent, at least 90 percent, at least 95 percent, and 100 percent identity with an amino acid sequence selected from the group consisting of SEQ ID NO;

    59, 60, 61, 72, 73, 74, 84, 85, 86, 96, 97, 98, 108, 109, and 110;

    c. an isolated polypeptide comprising;

    (i) at least one framework region from a variable domain from an animal immunoglobulin heavy chain, which polypeptide binds LPA in a physiological context and comprises at least a first CDR peptide, and optionally a second CDR peptide or second and third CDR peptides, wherein the first, second, and third CDR peptides each independently have a sequence identity selected from the group consisting of at least 65 percent, at least 80 percent, at least 90 percent, at least 95 percent, and at least 100 percent identity with an amino acid sequence selected from the group consisting of SEQ ID NOs;

    56, 57, 58, 62, 69, 70, 71, 81, 82, 83, 93, 94, 95, 105, 106, 107, and 111, wherein the polypeptide optionally is selected from the group consisting of a full length variable domain of an immunoglobulin heavy chain or fragment thereof and a full length immunoglobulin heavy chain or a fragment of an immunoglobulin heavy chain; and

    (ii) one framework region from a variable domain from an animal immunoglobulin light chain, which polypeptide binds LPA in a physiological context and comprises at least a first CDR peptide, and optionally a second CDR peptide or second and third CDR peptides, wherein the first, second, and third CDR peptides each independently have a sequence identity selected from the group consisting of at least 65 percent, at least 80 percent, at least 90 percent, at least 95 percent, and at least 100 percent identity with an amino acid sequence selected from the group consisting of SEQ ID NO;

    59, 60, 61, 72, 73, 74, 84, 85, 86, 96, 97, 98, 108, 109 and 110, wherein the polypeptide optionally is selected from the group consisting of a full length variable domain of an immunoglobulin light chain or fragment thereof and a full length immunoglobulin light chain or a fragment of an immunoglobulin light chain; and

    d. an isolated anti-LPA antibody heavy chain, which anti-LPA antibody heavy chain comprises a variable domain having an amino acid sequence selected from the group consisting of SEQ ID NO;

    114, 118, 122, 126, and 130;

    e. an isolated anti-LPA antibody light chain, which anti-LPA antibody light chain comprises a variable domain having an amino acid sequence selected from the group consisting of SEQ ID NO;

    115, 119, 123, 127, and 131;

    f. an isolated anti-LPA antibody having two heavy chains and two light chains, wherein each immunoglobulin heavy chain comprises a variable domain having an amino acid sequence selected from the group consisting of SEQ ID NO;

    114, 118, 122, 126, and 130, and each immunoglobulin light chain comprises a variable domain having an amino acid sequence selected from the group consisting of SEQ ID NO;

    115, 119, 123, 127, and 131, and wherein said heavy chains and said light chains are independently derived from two or more different hybridoma cells;

    g. a multivalent binding molecule that comprises;

    (i) at least first and second ligand binding elements, wherein the first ligand binding element, and optionally the second ligand binding element, binds LPA in a physiological context and comprises at least a first CDR peptide, and optionally a second CDR peptide or second and third CDR peptides, wherein the first, second, and third CDR peptides each independently have a sequence identity selected from the group consisting of at least 65 percent, at least 80 percent, at least 90 percent, at least 95 percent, and 100 percent identity with an amino acid sequence selected from the group consisting of SEQ ID NOs;

    56, 57, 58, 62, 69, 70, 71, 81, 82, 83, 93, 94, 95, 105, 106, 107, and 111, wherein the multivalent binding molecule optionally is selected from the group consisting of a full length variable domain of an immunoglobulin heavy chain or fragment thereof and a full length immunoglobulin heavy chain or a fragment of an immunoglobulin heavy chain; and

    /or(ii) at least first and second ligand binding elements, wherein the first ligand binding element, and optionally the second ligand binding element, binds LPA in a physiological context and comprises at least a first CDR peptide, and optionally a second CDR peptide or second and third CDR peptides, wherein the first, second, and third CDR peptides each independently have a sequence identity selected from the group consisting of at least 65 percent, at least 80 percent, at least 90 percent, at least 95 percent, and 100 percent identity with an amino acid sequence selected from the group consisting of SEQ ID NOs;

    59, 60, 61, 72, 73, 74, 84, 85, 86, 96, 97, 98, 108, 109, and 110, wherein the multivalent binding molecule optionally is selected from the group consisting of a full length variable domain of an immunoglobulin light chain or fragment thereof and a full length immunoglobulin light chain or a fragment of an immunoglobulin light chain; and

    /or(iii) a scaffold to which is linked at least first and second ligand binding elements that each binds LPA in a physiological context, wherein the first ligand binding element comprises functionally associated first and second polypeptides, wherein the first polypeptide comprises at least one CDR peptide having an amino acid sequence that has a sequence identity of at least 50 percent with an amino acid sequence selected from the group consisting of SEQ ID NOs;

    56, 57, 58, 62, 69, 70, 71, 81, 82, 83,93,94,95, 105, 106, 107, and 111, and the second polypeptide comprises at least one CDR peptide having an amino acid sequence that has a sequence identity of at least 50 percent with an amino acid sequence selected from the group consisting of SEQ ID NO;

    59, 60, 61, 72, 73, 74, 84, 85, 86, 96, 97, 98, 108, 109, and 110; and

    h. diagnostic reagent comprising a derivatized lysophosphatidic acid which comprises a polar head group and at least one hydrocarbon chain, wherein a carbon atom within at least one hydrocarbon chain is derivatized, optionally with a protected pendant reactive group optionally selected from the group consisting of a sulfhydryl (thiol) group, a carboxylic acid group, a cyano group, an ester, a hydroxy group, an alkene, an alkyne, an acid chloride group, and a halogen atom, and wherein the derivatized lysophosphatidic acid is optionally associated with a solid support, optionally covalently, or is conjugated to a carrier moiety optionally selected from the group consisting of polyethylene glycol, colloidal gold, adjuvant, a silicone bead, and a protein, wherein the protein is optionally selected from the group consisting of keyhole limpet hemocyanin, albumin, bovine thyroglobulin, and soybean trypsin inhibitor, wherein the carrier moiety is optionally attached to a solid support.

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